Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0053.Seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    28   1.4  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   4.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.5  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   9.5  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   9.5  

>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 328 LVRRHRWETDVPSTGLVLGRAADPRVGCEPT*ASLCTHTLVTSGLITNLCCIW 486
           + R  +W T    +G+V G  A       P    +  H  +  G IT LCC W
Sbjct: 292 IFRTRKWSTIGFCSGVVAGLVA-----ATPCAGFVSPHASLAIGAITGLCCNW 339


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 397  PRVGCEPT*ASLCTHTLVTSGLITNLCCIWVTGAHRRHNVNAATHL 534
            P  GC      L T+   T   I ++ C+  TG HR    N+  HL
Sbjct: 956  PPKGCRKI--VLSTNIAETGVTIPDVTCVIDTGVHREMRYNSRRHL 999


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 438 SHSRHERPYNKSLLHLGYR 494
           SHSRHE  +++  LHL ++
Sbjct: 109 SHSRHEEIHHQQQLHLNHQ 127


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 441 VSAQRRSRRFTTYARVSCS 385
           +S+ RRSR+F++ +RVS S
Sbjct: 508 ISSNRRSRKFSSSSRVSVS 526


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 355 QSPSGVAARVAVDIYNISY 299
           QSPSG   +V +D+YN  Y
Sbjct: 124 QSPSGNEVQVGLDMYNEGY 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,146
Number of Sequences: 5004
Number of extensions: 39296
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)