Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0051X.Seq
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   2.3  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.3  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   9.3  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 356 YVKHYLFYKQLFGIQCN*IQKLGLRTTLV-YFN 261
           +++  L+YK++FGI  + + K   R +LV YFN
Sbjct: 366 WIERCLYYKKIFGIDEHALAKPFFRPSLVPYFN 398


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 397 NIFGNGTLLMRKDDM*NIIYFTNNCSVYSVIKFRNLV*ERRWCIL 263
           N+ GN ++L R   +  I+ F  +CS + + K   ++  R W  L
Sbjct: 408 NVAGNWSILTRAIALAQILGFHLDCSEWQIPKEEKILRNRVWWAL 452


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 357 SSLRIKSVPFPKIFEIELYAGSFGIVSII 443
           S L   +VP  K+FE EL  G  G++S++
Sbjct: 370 SELTYNNVPISKVFEEELGIG--GVISLL 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,168
Number of Sequences: 5004
Number of extensions: 35275
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)