Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C09f
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    35   0.003
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po...    27   0.51 
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    24   6.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   6.3  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    23   8.3  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    23   8.3  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 35.1 bits (77), Expect = 0.003
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 139 LNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNAL 291
           LN    +S     + KFYST+S + +  E   SK    +  LNRPK LNA+
Sbjct: 33  LNASSTMSRAFIRNPKFYSTSSNDTVLYE---SKNGARIFTLNRPKVLNAI 80


>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 107

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 99  CRYCNSCFA-GKECTEQVQSGIRNKPSIYKVL 191
           C+ CNS    GK C+ + +   R  PSI +VL
Sbjct: 59  CKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 94  ASVATVTRALLGKNVLNKCKVVSATSQASIKF 189
           +S+AT+ + L     +N C+V+   S  ++K+
Sbjct: 504 SSIATLRQELAQVTEINSCRVLQHRSNPTLKY 535


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 49   YCINPSTWWFIFLKMASVATVTRALL 126
            Y ++   WW+++  + SVA+++   L
Sbjct: 1971 YTVSSVFWWYLYRMLPSVASLSLPFL 1996


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = +3

Query: 90  NGF-CRYCNSCFAGK 131
           NGF CR C  C+ G+
Sbjct: 186 NGFWCRVCRECYEGR 200


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 190 YSTASYENIKVEVVGSKKNV 249
           YS   +E I++EV+ +K+N+
Sbjct: 39  YSKTVFEEIELEVIPNKQNI 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,254
Number of Sequences: 5004
Number of extensions: 21944
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)