Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B09f
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   3.4  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   3.4  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   5.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.9  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -2

Query: 231 IANYS*RNSLVFVTDLAVVVFIILLSVVTIYLRNDVTFVLFLSLFXSIYCQRFNLT 64
           I  Y   +SL+ +  + V + + +  VVT+ +  DVT+ + LS++  +Y   F L+
Sbjct: 76  IYKYIEPHSLISIPGIFVFLGLYVPFVVTLLIPIDVTWDVSLSIWRFLYWLTFVLS 131


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 201 VFVTDLAVVVFIILLSVVTIYLRNDVTFVLFLSLFXSIY 85
           +F+    V+V  I+   +T+Y  +  T +LF+S+F   Y
Sbjct: 343 LFLAPFLVIVGWIISQPLTLYFESLETVILFVSVFLVNY 381


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 162 LLSVVTIYLRNDVTFVLFLSLFXSIYCQRFNLTN 61
           +L V  IY+ ND  F ++  L   ++     LTN
Sbjct: 452 VLGVALIYVPNDSVFSMYKVLHSLVFQNELGLTN 485


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 282  YFPLCPRTNKSMVYFLIIANYS*RNSLVFVTDLAVV 175
            Y  LC     S V+FL + NY+  ++     DL ++
Sbjct: 896  YMVLCAIVQFSGVFFLYLKNYNFNDNQFLFMDLLII 931


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,159
Number of Sequences: 5004
Number of extensions: 24239
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)