Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A08f
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    29   0.40 
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    27   1.2  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         26   2.2  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   3.8  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    24   8.7  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    24   8.7  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 131  QYNLYNLTLTPVQLGVQERDRQLKKYKI 214
            Q+N  N+ +TP    ++   RQ+K YK+
Sbjct: 1213 QFNFVNIVITPESESIRRTGRQIKFYKV 1240


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 249 LTLRIKCIVPI*-ILYFFNCLSRSCTPS*TGVNVKLYRLYWNRSQERK 109
           L LR   I+P+  IL F N  S+ C P   G N     L+ N+S+E++
Sbjct: 29  LVLRKSNILPLQHILRFSNFASKQCFPLRNGNNSASKALWNNKSKEKE 76


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 101 ISSFRS*ERFQYNLYNLTLTPVQLGVQE 184
           +S+ R+   FQY+L+N  L PVQ+ +Q+
Sbjct: 188 MSAVRNHGCFQYSLHNEKLEPVQVHMQD 215


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 211 NLNRNYTFYPKCQHMHVS 264
           +L+ N+ FYPK  H+H S
Sbjct: 417 DLSINFQFYPKNVHLHTS 434


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -3

Query: 409 RFSLNTNMNTCWCFINFNSS 350
           +  ++ N  + WC+++FN+S
Sbjct: 737 QLDISINSGSKWCYVDFNTS 756


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 36  SIMFPPKIFRGNVSTNKKSAAP 101
           +I +PP+I  GN  T   SA P
Sbjct: 358 TIGYPPQIVEGNYDTRLPSALP 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,458
Number of Sequences: 5004
Number of extensions: 28953
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)