Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A04f
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   1.8  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    25   5.4  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    24   7.1  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    24   9.4  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = -2

Query: 255 HPKCYFYYKFNF-SLSSIIITVHYTKKYDQKKL------FFCCSIDKIASASRSNDTSVN 97
           HP  Y +Y  +  SL  + + VHYT  +D+ ++        C ++  +  A  ++  S+ 
Sbjct: 723 HPYQYDFYLISHPSLQGVSVPVHYTVLHDEIQMPPDQFQTLCYNLCYV-YARATSAVSLV 781

Query: 96  PVITYSHVV 70
           P + Y+H+V
Sbjct: 782 PPVYYAHLV 790


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 109 YFSQSCYYVQSCRHLKVTIAPPATVNI 29
           Y + +C Y+ S R  K  I  PA+ NI
Sbjct: 226 YLTGTCLYLSSLRKHKPEILAPASSNI 252


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 53  DGNL*MTT*LYVITGLTEVSLDREAEAILSMEQQKK 160
           +G+L M   LY++  +TE  LD  ++ +L +EQ  +
Sbjct: 365 EGSLRMKRMLYIVDSMTEQELD--SDGLLFVEQPSR 398


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 340 TIDIFKRLHANIFLKISTIIKTYIV 266
           T +IFKR+    ++ I+ ++K YI+
Sbjct: 380 TSEIFKRIGFPSYIDIAAVLKRYIM 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,708
Number of Sequences: 5004
Number of extensions: 26948
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)