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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0075.Seq
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    28   0.86 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   2.6  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    27   2.6  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   3.5  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.6  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   6.1  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   6.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.0  

>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +2

Query: 362 CKKFTKPLVTWNSW---QESGLKDLWREVTFLQPQ 457
           CKK  K +  W +W   QE  L+  WR  +   PQ
Sbjct: 363 CKKVVKVIEVWKTWIAFQEETLERAWRNFSGNTPQ 397


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 161 HYLLQPDSKFLVSFL--PSSYLSSRNQYVKRGLLP 63
           H L Q  S +    L  P+SYLSS NQY  + + P
Sbjct: 252 HVLQQDQSTYDQKVLMPPASYLSSPNQYTLKNVSP 286


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 GTYYQAGGDNDRAVDPAICDKGLGIMQKASDL 226
           G ++ A GD++   DPA  DK  G M  +SDL
Sbjct: 69  GAFFFAVGDDNAVFDPATLDK-FGNMLGSSDL 99


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 155 LLQPDSKFLVSFLPSSYLSSRNQYVKRGLLPFF 57
           + +P   F++SFL S+Y   +N +    LL FF
Sbjct: 499 IAEPIQSFILSFLRSTYKVLKNDFQVFDLLNFF 531


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 334 FIDMD-RIESLQEIYETPGDVELLAGIWIERPMEGGYVPPTAA 459
           F D+D    + QEIY+ P  V L  G+W+   +E   +   +A
Sbjct: 80  FCDLDLEFCAQQEIYDHPKVVVLKNGMWMRHVLEKNQITTKSA 122


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 335 SLTWIELKVCKKFTKPLVTWNSWQESGL 418
           SLTW ++K       P ++WN+   +GL
Sbjct: 328 SLTWQQMKAIPNSLVPQLSWNAEVTAGL 355


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 471 VYDTSCGWRNVTSLHRSFNPDSCQEFH 391
           ++D+S   + ++ LH+SFN  + Q F+
Sbjct: 129 IFDSSPSLKTLSMLHKSFNLHNFQSFY 155


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +2

Query: 44  KYVGKKMVTDLSLHTDFLMRDKNLAKMTRGTYYQAGGDNDRAVDPAICDKGLGIMQKASD 223
           KY+GK++   L    +   R K+L  +++  ++     ++R     +CD GL   QKA+ 
Sbjct: 15  KYLGKRIRVQLEFKKELAQRSKHLMDVSQCEHW-----HNR-----LCDVGLDSKQKAN- 63

Query: 224 LTAADLR 244
            TA ++R
Sbjct: 64  -TAIEIR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,156
Number of Sequences: 5004
Number of extensions: 52611
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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