Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0019.Seq
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   3.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.4  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   5.4  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    24   9.4  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 42  AI*TFLNLNYIHENRWNLNYN 104
           A+  F N+ ++H++ WNL+++
Sbjct: 181 AVNNFANITFLHDDVWNLDHS 201


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 185  SDFRANFICNLISFYFICLSKIKENLTVVIQIPTIFM 75
            S FR+  +   I+ Y  CLS+  EN  ++ +  T+++
Sbjct: 2240 STFRSKMLTQSITHYLKCLSESDENDVLISRCCTMWL 2276


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -3

Query: 149 SFYFICLSKIKENLTVVIQIPTIFMYVI*VQKGL 48
           S+YF+C    +++  +   +  + MY++  ++GL
Sbjct: 541 SYYFVCFRSFEQDPELANYLEPLNMYIVVFREGL 574


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 153 YIFLFYMSFKN*RKFNCCNSN-SNDF-HVCNLSSKRFIL 43
           Y+F  Y S+K+ R++ C +   S  F H+  L    ++L
Sbjct: 153 YLFSSYFSYKSSRQYTCSSEEISKVFRHLNRLGGSEYVL 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,377
Number of Sequences: 5004
Number of extensions: 26349
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)