Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0015.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    25   4.1  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   7.1  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    24   9.4  

>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 206 GAMIYA*P*DHTGPELLRTEPNGESW 129
           G M +    D  GP L   EPNG  W
Sbjct: 132 GVMSFVATYDSEGPHLYMVEPNGVYW 157


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 393 DRIRNWEIRRKTKVP 349
           D +R+W IR+ TK P
Sbjct: 316 DEVRSWTIRKGTKAP 330


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 180 GPYWTRVAEDRAQW--RELEEAYATRHAELRDI 88
           G  WT+V ED+  W  RE ++ + +R   L D+
Sbjct: 393 GYQWTKVLEDKFNWNVRERQKPF-SRKPSLSDV 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,923
Number of Sequences: 5004
Number of extensions: 39508
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)