Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0004.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   1.9  
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   10.0 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   10.0 

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 214 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 113
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 3   GRSLIIRLLSRQHNYIFFLPGTKPGLFMYA 92
           GRS ++R +SR   Y+     +KPG F ++
Sbjct: 53  GRSTLLRSVSRSIKYVL----SKPGAFFFS 78


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 387  RQFFYLGRFKYIGRFLHFV*CFQESSFRREQTFTQAWSRKNMPLLENIFDIPYHL 223
            R+++YLG    + RFL F   F    F     F     +  M +L N+  I YH+
Sbjct: 1333 REYYYLGTQLQLDRFLSFY--FAHPGFHLNNMFIMLSVQLFMVVLINLGAI-YHV 1384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,293
Number of Sequences: 5004
Number of extensions: 30651
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)