Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0001.Seq
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   2.1  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   3.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   4.9  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   4.9  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    24   6.5  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    24   8.6  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/62 (24%), Positives = 25/62 (40%)
 Frame = +3

Query: 129 THVAGDNEQYTGEXXXXXXXXXTVNGKTVSSGGVSELTNDGKPSKKRSWNIKMAIKXIQR 308
           T V+   E   G          T   +  ++ G ++   DG+ + K+SW  K   K   +
Sbjct: 586 TPVSATEEHAAGTTKPAPAAGATATAENETADGKAQTATDGEAAPKKSW-FKRMKKSFGK 644

Query: 309 LF 314
           LF
Sbjct: 645 LF 646


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 60  GFSDTFKMPEIPEIKSLEFDDIKTHVA 140
           GFSD  ++ E P    + +DDI +H A
Sbjct: 919 GFSDINEIKEHPFFNGINWDDIFSHEA 945


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 27   FVWEDDDDLFPGFSD--TFKMPEIPEIKSLEFDDIKTHV--AGDNEQYTGE 167
            F WED+D+   G+ D   +   E+ E  S  F+ ++       DN+ +  E
Sbjct: 1943 FEWEDEDNASSGYEDELDYNEDEVGENDSTTFEAMENAFTETSDNDDHLEE 1993


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 222 GGVSELTNDGKPSKKRSWN 278
           GG + +T +G P+++  WN
Sbjct: 109 GGETHMTGNGPPNEEEKWN 127


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 131 SFNIIKFKRLYLWYLWHLERI 69
           SF +++  R +LW  +HL+ I
Sbjct: 365 SFEMLEILRRFLWLFFHLDAI 385


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 121 ILKLTSREITSNIPESLSRVTVPH 192
           ILKLT +  + N+P  +    +PH
Sbjct: 218 ILKLTEKYSSQNVPFDVYAAQIPH 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,291
Number of Sequences: 5004
Number of extensions: 21166
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)