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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0046
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.8  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    28   1.8  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   2.4  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    27   2.4  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   4.2  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   5.6  
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    26   5.6  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   9.7  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   9.7  

>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = -2

Query: 231 AVNPVKRFIVKSLGLSATFGPVFLIINGNS-------GMMYISCT 118
           A+  +K+F + SLGL+    PV L+++           M++++CT
Sbjct: 33  AIGNIKKFSIGSLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACT 77


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 367 FLKIFGVYPLVCALKKYQMKKLPLELVIKAGKIKNEKGERW 489
           F+ I  +  +   LK YQ K +PLE   +  K++ +  E W
Sbjct: 315 FIAIMDIKDVRPVLKSYQGKNIPLEYARREEKLRTKLIEDW 355


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 175 ERGAQAKRFHNKSFDGINSCVRLPEPSRFPQIFSSEAHAIGLEWDNA 315
           E    A+RFH++S D     VR    S FP +    +   G    N+
Sbjct: 503 EPSLDAERFHSRSVDASPKAVRRESRSFFPSLTRKRSKFFGSSQSNS 549


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 431 YHWNS*LKPVRLRTRKANDGVGFAEKNAKLNIVWTMFPDTGSNNLSAILMNTP 589
           Y W+    P +L+   A      A K +K+  V  +FP+    N  A+   TP
Sbjct: 178 YFWSCFFSPSKLKITDAKPLAKVAAKASKIGTVVILFPEGVCTNGRALCQFTP 230


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 86  IVASNRRPWPIL*QHFLFPSGNQRI 12
           +V ++ RP P+  QH+LFPSG+  I
Sbjct: 365 VVYTDFRPTPL--QHYLFPSGSDGI 387


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 270 YLGEARRFWKANAAVNPVKRFIVKSLGLSATFGPVFL 160
           ++    RF +  +  NP   F V SLGL + F  +FL
Sbjct: 96  FMEAIERFIEPPSVSNPTLMFFVGSLGLLSNFVGIFL 132


>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 496 FCREKRQAKHCLDYVPRYGFK*LVCHFDEYP 588
           +C+ +  AKH  D  P Y F+ L   F +YP
Sbjct: 80  YCKHQEHAKHVEDTDPGYSFENL--RFKKYP 108


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -1

Query: 427 FSFGISLKRKREGKPRIF*GSAQRR*PPISI--SGILIRPRCPTPGRWRELRLKISG-GS 257
           FS   +LK     KP +F GS+QRR    +I  S I +      PG   EL  K  G GS
Sbjct: 439 FSRTNALKTLYGSKPHVFSGSSQRRATGKNIHESAIALFSLHDVPGLMEELIYKSRGRGS 498

Query: 256 ATVLEGER 233
                G +
Sbjct: 499 PKGFRGSQ 506


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/61 (21%), Positives = 29/61 (47%)
 Frame = +1

Query: 232 CVRLPEPSRFPQIFSSEAHAIGLEWDNAVELKCRLYLSAVSGAEHFLKIFGVYPLVCALK 411
           C+ + +  +F  I++   +A  L  D   + +C  Y+S  S     +    ++ L C+L+
Sbjct: 252 CLIIADIFQFHNIYAMTTNAPNLLQDPDFQRECTAYVSTNSSNAKNVTFATIFKLYCSLR 311

Query: 412 K 414
           +
Sbjct: 312 Q 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,463,103
Number of Sequences: 5004
Number of extensions: 75670
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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