Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0038
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   104   7e-24
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   103   2e-23
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   2.8  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   3.7  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   3.7  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    25   4.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   4.9  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   4.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.6  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   8.6  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  104 bits (250), Expect = 7e-24
 Identities = 45/82 (54%), Positives = 60/82 (73%)
 Frame = +1

Query: 16  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 195
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 196 LRHIYIRSPVGVKTVTKIFGGA 261
            RHIY+R  VGV  + K++GG+
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGS 82



 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 27/54 (50%), Positives = 37/54 (68%)
 Frame = +3

Query: 255 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 416
           G    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 81  GSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  103 bits (247), Expect = 2e-23
 Identities = 44/82 (53%), Positives = 60/82 (73%)
 Frame = +1

Query: 16  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 195
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 196 LRHIYIRSPVGVKTVTKIFGGA 261
            RHIY+R  VGV  + K++GG+
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGS 82



 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 27/54 (50%), Positives = 37/54 (68%)
 Frame = +3

Query: 255 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 416
           G    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 81  GSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 225 WSQDCHQDLRGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 368
           W+   +Q+L   K N  +          +   AL S + LKL E++QD
Sbjct: 383 WNSTVYQELLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQD 430


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 252 EDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 145
           +D+G +L+ N+ +N+  TK+ S   I+       QL
Sbjct: 110 QDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 309 YCLMTCR---NVKV*LHYVCAPEDLGDS 235
           YCLMTCR    V+   H +  P  +G+S
Sbjct: 79  YCLMTCRKTDKVEQATHILVTPSKIGES 106


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 195 PSSYLHSLTCWSQDCHQDLRGRKRNGVTPSHFCRSSGSIARKALQSL 335
           P+S L +  C+S      +     N ++P H+C  S   + +A + L
Sbjct: 145 PTSALLAEICYSYGQRAYIGKCNMNNLSPDHYCEKSAESSLEATRQL 191


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 229 VKTVTKIFG--GANVMELHLHISAGHQAVLHARLCNRW 336
           + T+ ++F   G +V +L+L + + H   L +R C +W
Sbjct: 272 ISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 131 QLASKSWLRMTLIGSMCVVL 190
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 179 CVVLPSFVIFTFAHLLESRL 238
           C+V  S V+F  AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 404 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 312
           VSS  C E   T     L+ +N ++C+  LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,157
Number of Sequences: 5004
Number of extensions: 36627
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)