SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0017
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    40   4e-04
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    29   0.60 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.2  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   4.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   4.2  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    26   5.6  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   9.8  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   9.8  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   9.8  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   9.8  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
 Frame = +3

Query: 15  MEPTLAELTEVAIKSL--SRNKE---GFFLFVEGGRIDXXXXXXXXXXXXDETIELSAAV 179
           ++P L+E+ E A+  L  + N++   GFFL +EG RID             E +E + A 
Sbjct: 274 VQPKLSEMVETALDVLLNATNEDTSKGFFLLIEGSRIDMASHNNDPIAHVYEVMEYNRAF 333

Query: 180 EKARELLSEQDSLIVVTADH 239
           E A   + +    ++ T+DH
Sbjct: 334 EIASAFVEKNGGSLISTSDH 353


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 194 AALGAGFINRSDGRPRSRHVLSGYTQR 274
           AA  A  +N ++ RP S HV S YTQ+
Sbjct: 132 AAQSAHVMNSTESRPSSAHVSSSYTQK 158


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
 Frame = -2

Query: 495 PQANTATSSPP*VSESSGTAAGYTYSDPR*SCRVGSTRCPPLGSRYPGPLPYESV-M*GM 319
           P +      PP  + SS ++       PR S   GS   PP G   P P P  S    G 
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPR-SNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374

Query: 318 PSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAA--PVLSPP 175
              P +S     +PP    P      R  P+L  +  A R +  PV +PP
Sbjct: 375 QPPPLSSSRAVSNPPA---PPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 299 DALGDDGIPYMTLSYGNGPGYREPRGGQRVDP 394
           DA G++G+       G GPG   P GG   DP
Sbjct: 69  DAYGEEGLNGQPGGPGGGPGEGFPGGGFGFDP 100


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 297 EGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPPP 172
           E PR+ PPR   P  T  E   P+L   N + + +P+  PPP
Sbjct: 357 EKPRL-PPR---PSHTLSELSSPALTSENLSSKPSPLFPPPP 394


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 511 FSGLYEQSHIPHRMAYAACIGPGKHACQHSPHS 609
           F G+++    PH +   +C   G +A  H PHS
Sbjct: 224 FFGIFDWD--PHGLCIYSCFKYGSNAYSHEPHS 254


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 506 ASSLASTSRVTSRIAWRTQHASVPASTLANIHHIQLLNLFDIL*NLSLLVKDK 664
           + +L+  S +TSR+ W  Q ++V    L  +    L+  + +   LSL V D+
Sbjct: 837 SKNLSKNSFMTSRVNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTVHDE 889


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 158 HRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGY 265
           HR +R  G  +  + G+GF +   G PR +++ S Y
Sbjct: 256 HRHRRSTGSLSVGSSGSGFSSGGSGNPR-KNLFSPY 290


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 332 TLSYGNGPGYREPRGGQRVDPT 397
           T+SY +GP + +  G +R DP+
Sbjct: 294 TISYRSGPEWEQRFGNRRADPS 315


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 516 REEAW*GPQANTATSSPP*VSESSGTAAGYTYSDP 412
           REEA   P ++TAT  PP  S  S  A    YS P
Sbjct: 306 REEAAAEPSSSTATDIPPPYSTPS-VAGASDYSTP 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,686
Number of Sequences: 5004
Number of extensions: 62439
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -