Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0014
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    28   1.7  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   2.9  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    27   3.9  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   5.1  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 121 NTSQDAFLHYNVVKIECPFLSLRFSN 44
           N S   F HY +VK+ CP +    +N
Sbjct: 612 NVSLHLFYHYLIVKVSCPIMFFYLNN 637


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 438 TKILYFLILLVKLNVTYNYCVRWRPSDG 355
           T I Y L     LN+  NY + W P+ G
Sbjct: 241 TPITYVLCFAAPLNILLNYLLVWHPTIG 268


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = -3

Query: 635 FKTLLSNLYKVFPKHFSC*LNPASDIL*HRCYSLIVRFYTLIILFNIVKILIT 477
           FK+ +++  +  P H      PA+ +   R   ++ R Y + +LFN + + ++
Sbjct: 5   FKSSINDFLEQLPNHARLYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALS 57


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 263 VRTFYSKRRRWCCCVTCYLKNEILDVMLPYTPS 361
           ++T+YS +  +   VT Y +NE+   M PYT S
Sbjct: 220 IKTWYSDKN-FTLYVTDYTENELFFPMSPYTSS 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,261
Number of Sequences: 5004
Number of extensions: 58416
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)