Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30039
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    28   1.1  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    28   1.1  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   2.6  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    27   3.5  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   6.0  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   6.0  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    26   6.0  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    26   6.0  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   8.0  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   8.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.0  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    25   8.0  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    25   8.0  

>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 409 KRREYPRTNRTNQPVFYAQIFLE*LWKSCGHY*TY*QSKFEIDV 540
           K   Y  + R  Q V    ++   LWK+ GH+  Y ++ F  D+
Sbjct: 326 KYMRYQYSKRGYQEVITPNMYNVNLWKTSGHWNNYSENMFSFDI 369


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 38   SFMFAEASSIL---ERYALAKDAGFKAVESGFPFGFSLEQVRNAKQSAGL 178
            +F F  ++S +   E   +AKDAG  A  SGF  GFS     N+ Q A +
Sbjct: 963  AFSFGASNSSMNKEENTPMAKDAGDTAPASGFKSGFSF-GANNSPQPASM 1011


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 374 TSPNVSELDFPLYQPLCEFFSHPRPSHIRLSY 279
           T PN   LDF     LC    +PR +H+R+ Y
Sbjct: 235 TIPNA--LDFLFMPSLCYQLYYPRTAHVRIHY 264


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 438 SISPWIFSPF-RTSTAYSKFFSNVSQCFGVGFSTLPAIM 325
           ++ P   SP+  +S AY K    +   FG G S  PA+M
Sbjct: 492 TLEPSPVSPYDESSDAYKKLAGAIRYTFGDGTSVTPALM 530


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 619 HVPMYGQ*FRN-IMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQEI 467
           H+   GQ F + I SN++    K     H SQ    N  NN    ++I+  I
Sbjct: 47  HISENGQNFGSAISSNISQRNFKTLRASHLSQYRDCNRENNTEDKNVISTGI 98


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 269 TNLNTTIEYAKALDAKKIHIMAGKV 343
           T+LNT+I++ + + A  IH+   KV
Sbjct: 179 TDLNTSIKFTENISANAIHVNQDKV 203


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -1

Query: 403 VDSI*QIFLKRL---PMFRSWIFHFTSHYVNFFRIQGLRIFDC 284
           ++S+  +FL       +F+ +I    SH+ +F RI+ LR ++C
Sbjct: 48  IESVKDVFLVGFYDESVFKDFINEVASHFPSFNRIKYLREYNC 90


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 473 LSDYGRAVD-IIKRIDSPNLRLMLDIFHLQQIAGDITHNI 589
           +SD+   +D  +KRI  P +R  LD  HL+ IA   T  I
Sbjct: 96  MSDFAIGLDPSLKRI-LPEIRFRLDFQHLKSIAKGATSTI 134


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 144 SKLKPKGKPDSTALNPASLAKAYRSKMEEASANIKDRLAQ 25
           SKL+ + K  S A   A LAK  +    +A++++  +LA+
Sbjct: 155 SKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVNGKLAE 194


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 368 ETFEKNLLYAVDVLKGENI 424
           E FEKN+L +V+ + GEN+
Sbjct: 220 EKFEKNILASVNAVFGENL 238


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 343 HFTSHYVNFFRIQGLRIFDC 284
           H+TSH VN    +  ++FDC
Sbjct: 704 HYTSHLVNTIMRKVSKVFDC 723


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 635 FRIVTSPDTPRRDKLQICSRTLG 703
           FR+V SP++PR D ++IC  ++G
Sbjct: 329 FRVVYSPNSPRLD-VRICIGSVG 350


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 89  KDAGFKAVESGFPFGFSLEQVRNAK-QSAGLQQIAI 193
           K+AG+   E+GF     +E+  N K +++GL+  AI
Sbjct: 662 KEAGYVVTEAGFASDIGMEKFFNIKCRTSGLKPDAI 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,243
Number of Sequences: 5004
Number of extensions: 62639
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)