Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30021
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    28   1.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.1  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   4.1  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   7.2  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 255 IFAYFFGSYISSYTNDRPHFL 193
           IF YFF S+ S  TN++P F+
Sbjct: 42  IFFYFFSSHKSKGTNEKPKFV 62


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = -1

Query: 581 LNDNVSV-KSNFNTIFVKSIKTHLF 510
           LN+N+ V +S+F ++F+K +K HL+
Sbjct: 570 LNENLFVGQSSFKSVFLKWLKWHLY 594



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +3

Query: 30   GWAYSKSTLICTVKQILNTSI--LIENSQYGN---VFWKLIIQNDCNLYIKINI 176
            GW + KS  I  +   +  +   L +   Y     + WKLI Q  C+L  K +I
Sbjct: 1544 GWNFFKSPEIADLNHYIPKTDPRLCDTKTYEESKLIIWKLICQKACSLLFKYDI 1597


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 336 FYCNIINNL*FLWENRLFKIHSLN 265
           FY  I N +  LW  +LF I+S+N
Sbjct: 142 FYYGIYNAVGLLWITKLFHIYSVN 165


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 378 TKHVFFPVI--LKLFGFYCNIINNL*FLWENRLFKIHSLNILNIF 250
           +K +F P +  LK  G  C + + +  L+  + F IH LN+ N +
Sbjct: 291 SKRLFGPGLTGLKNLGNSCYLASTMQSLFSIKEFAIHELNLFNTY 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,019
Number of Sequences: 5004
Number of extensions: 50770
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)