Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30013
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    29   0.40 
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    27   1.6  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.8  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    25   5.0  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.6  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 20  YVTYGLITRELDGVDSSY-RSAMSVQSSLAMGSIYMYGTEDQKQKYLP 160
           +V +  +T  + G +  Y  +A SV S L + ++Y Y  E++  K+LP
Sbjct: 535 FVPFAFVTFSITGGNRLYIYAASSVFSILCITALYYYTDEEKPPKFLP 582


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 213 KLGSVNPKQPINSPVAMRGKYFCFWSS 133
           KLGS+N ++P + P +  G+Y  F SS
Sbjct: 157 KLGSINSQRPDDLPPSQGGRYQGFGSS 183


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 224

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 10 WSFLRYVWSHYKRTRW 57
          WSF+   WS++K  +W
Sbjct: 33 WSFMANTWSNFKHIKW 48


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 116 IYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLV 238
           I  YG ED+  +Y+PR  T      F + EP   S A  L+
Sbjct: 328 IKKYGIEDEANRYVPRWLTRR----FLMDEPGMSSFAHALL 364


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 206 VPLTQNNQLIHL*PCVV-SISVSGLQFRTYKSNPLPNYSAHSSLIYKRSQRHLV 48
           +P T++N+      C++  ++  G + R    +P P+   ++  IYK +  HL+
Sbjct: 123 LPYTRHNEGGDWIQCIIIKVTGEGAKQRFEVQDPEPDDDGNAGQIYKTTANHLI 176


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 218 SDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKDDAGK 358
           +D  G    +K+   + CYV   S + ++NA   +  I WA +   K
Sbjct: 301 NDCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESCSK 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,021
Number of Sequences: 5004
Number of extensions: 42262
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)