Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30045
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    96   2e-21
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   4.3  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    24   7.4  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    24   7.4  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   9.8  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 43/79 (54%), Positives = 60/79 (75%)
 Frame = +1

Query: 37  MKFNKQVTSSRRKNRKRHFSAPSHIXRVXMSSPLSKELRXKFNVKSMPIRKDDEVQVVRG 216
           MKF++ VTSSRRK RK HF APS + RV MS+PLSKELR ++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 217 HYKGQQVGKVMQVIVKSLL 273
             KG++ GK+  V  K  L
Sbjct: 61  SNKGRE-GKITSVYRKKFL 78



 Score = 57.2 bits (132), Expect = 9e-10
 Identities = 27/46 (58%), Positives = 35/46 (76%)
 Frame = +3

Query: 255 YRKKFVVYIERIXRXXANGATAYVGIHPSKCVIVKLKMNKDRKAIL 392
           YRKKF++ IER+ R  ANGA+A VGI  SK VI KL ++KDRK ++
Sbjct: 73  YRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLI 118


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +3

Query: 12   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYXASVDVL 131
            C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3300 CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 234 GWQSDAGYRKKFVVYIERIXRXXANGATAYVGIHPSKCVIVKLKMNKD 377
           GW + +     F   I+ +    A   TA +G +P  C  V L +N D
Sbjct: 104 GWYATSPDLDAFSALIQNLYASPAEPGTAPLGTYPHPC--VHLTVNTD 149


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 211 VQPELHRLCE*AWILH*IXVLVP*TGERTSTLALYVKE 98
           + P+LH +   A + + +  ++P T E+T ++  +VKE
Sbjct: 737 IYPQLHSIDYQAPVANALQNIIPFTYEKTESIEEFVKE 774


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 118 VXMSSPLSKELRXKFNVKSMPIRKDD 195
           + M SPL KE+  ++    +  RK+D
Sbjct: 34  ISMKSPLEKEIANEYEALKVTERKED 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,684
Number of Sequences: 5004
Number of extensions: 27257
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)