Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30024
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    26   4.3  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   5.7  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    26   5.7  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   7.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   10.0 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   10.0 
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    25   10.0 

>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 586 VCNW*KIKTKCCKYD*YNFFIICSTFKHSPV 494
           +CN+  I+   CK D Y  ++I  T  H  +
Sbjct: 92  ICNYEDIEAGVCKDDDYGLYLINQTAPHDSI 122


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 348 CLPSQRHALVTLGVSDSAYSRSV*A*LFMKGSHIVFSH-*NCIISKRTNFTGECLKVEHM 524
           C+ S R AL      D  YS+   + +FM GS+I+ SH  N +I +R   T   L+++ +
Sbjct: 288 CVKSSRLALHDN--KDIEYSQQPASAIFMYGSYILTSHPDNSLILQRLYSTNNELRIKFL 345


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 289 LREAIPNTPDG**AHGLSLREFANTSPSKSNDLLN 185
           LRE+ P TP G  A G S     + S  +++D LN
Sbjct: 248 LRESFPQTPMGTEASGYSFDRTPHKSDIQASDRLN 282


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 129 IWRKPCVRFIFNVVFYLSVYCKYVFITANEKPNLLPTAKASN 4
           +W++  V F+      L++  +YV I  +E  N+  T K S+
Sbjct: 564 VWKRQPVSFMGRHERLLAIDGEYVHIMPSESKNIFETPKTSS 605


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 225 LLTLALARAMICSIYHWINFIIIRVT-FENVTFIW 124
           LL   L  +M+C+IY ++ F  +R T F    + W
Sbjct: 197 LLDATLLFSMVCAIYCYVRFFKLRHTPFSRPWWAW 231


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 434 HEQLGLYATTIGRIGNS*SDESVSL*REAEAATRKIADY 318
           HEQL  ++ T+ +  ++ SD+ +   + AE   + I +Y
Sbjct: 112 HEQLANHSLTLQKTLSAFSDQVIEFHKNAERKRKSIKEY 150


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 14  LAVGSKFGFSFAVIKTYLQY 73
           LA G ++ + F V+K+YL+Y
Sbjct: 49  LAFGIEYVYGFGVLKSYLKY 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,903
Number of Sequences: 5004
Number of extensions: 47175
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)