Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30010
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 76 5e-15
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 29 0.54
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 2.2
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 3.8
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 3.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 6.7
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 8.8
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 8.8
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 8.8
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 76.2 bits (179), Expect = 5e-15
Identities = 39/84 (46%), Positives = 55/84 (65%)
Frame = +1
Query: 259 DIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGR 438
++V + RL T +F DKKSY Y+K YMK + A+L+E P++V VF+ N +K IL
Sbjct: 67 NLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILAN 124
Query: 439 FKELQFFTGESMDCDGMVAMMEYK 510
FK+ F+ GESMD D MV +M Y+
Sbjct: 125 FKDYDFYIGESMDPDAMVVLMNYR 148
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +2
Query: 62 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 238
M +YKD+I+GDE+ SD Y +K VD+++YE ++VT Q GD+ I G NPSAE+A+E +
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59
Query: 239 SAVES 253
E+
Sbjct: 60 EGTET 64
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 256 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 402
+D V ++L+E F ++K T+YLK + L K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 616 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVP 518
AS ELL+ NFS+ R CL+N ++ CVP
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVP 812
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 531 VFAYHQSLIFHHGNHAITIHGLPSKELKFLKPAEDVFH 418
V H+ IFH GNH ++LK + A D+ H
Sbjct: 363 VLEVHEDFIFHEGNH--------FRQLKLILEANDILH 392
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 99 ISSPVIMSL*IFILMDWRRLKII 31
ISSP I + IFILM+ RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 121 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 11
+F + + L T + LI + +E+IK KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 200 FNPSAEEADEGTDSAVESELT*S*TTG*SKHTPSVTRNPTHCTSKT 337
+NPS D G V+S T S T T S+T PT ++ T
Sbjct: 826 YNPSQYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 586 SNI*NFSSSRPCLKNIMIGICVPSKSYIPSWQPCHHNPWTP 464
S + NF+S P + +PS++ PS QP + TP
Sbjct: 687 SGLSNFNSVTPSSSASLYPPLIPSEARTPSVQPANRRVTTP 727
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 456 ELKFLKPAEDVFHYFVHVCFKYFNLVR 376
+ FLKP ++ YF+ + +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +1
Query: 349 LVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYKTLM 519
++ K KAP + F++ N K + FK+ + D D +V + ++K +
Sbjct: 587 IIGKWYYKAPKEFATFESAKNLNGKSFVDNFKDRYYM--YKQDIDNVVGLKDFKVYL 641
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,364
Number of Sequences: 5004
Number of extensions: 63088
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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