Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00028
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    27   4.4  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   4.4  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   4.4  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   7.7  

>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 737 NNTENMYILVRRRRPHPRGIVQEWS 811
           +  +N+  L++ +RP  RGI+Q WS
Sbjct: 60  SEAQNLRGLLKIQRPIERGIIQNWS 84


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 623 LRVNITYPATGCPVAVTRRLQN-AQKNANLDTTLITNKTNNTENMYILVRR 772
           +  N ++P++       + +Q+ A +N N  T L+T+  N T+ M   +RR
Sbjct: 252 ISTNYSFPSSSLEDQPDKNVQSSAVENKNKHTNLVTSSFNLTKPMKSFIRR 302


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 698 NANLDTTLITNKTNNTENMYILVRRRRPHPRGIVQEWSRR 817
           N N  TTL+    +N+E    +VR+ R H    ++ WSR+
Sbjct: 274 NHNNKTTLLA--VHNSEERDYMVRQARHHQLQELENWSRK 311


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 254 DEHFATLPIKTHNFDLIASL--PENFDPRDKWPDCPTLNEVRDQGSCGSCWAFGA 412
           +E     P+ ++  D I +L  P++ D    WP    L  V   GS   C  FG+
Sbjct: 37  EESLKKYPVISNPQDFIVTLDGPDDPDLAVNWPLAKKLRNVAVMGSACLCAGFGS 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,655,274
Number of Sequences: 5004
Number of extensions: 78664
Number of successful extensions: 229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)