Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00016
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    28   1.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   7.9  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   7.9  

>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = -1

Query: 331 HQHEDRVGDKHAVALPDGTAASEECKMKAMPP----TIIQATGATLKLVSDSTVSMSAN 167
           H+ +  V ++ +  L DG A S E   K  PP    T  +A  ATL     S +S S N
Sbjct: 69  HRADSTVTEQSSEILFDGNAESAEPLSKRSPPFLAYTPKRAVSATLATTQSSPISTSFN 127


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 696 VAGVVREAQSEDDGHQFNGGDHD 628
           + G++ E Q+ DD  + NG D D
Sbjct: 131 IPGMITENQTNDDAKEVNGSDVD 153


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 418 LVHPVRDSSNYSVEIHKH-HYAQ 353
           LVH V ++  YSV + +H HY Q
Sbjct: 287 LVHLVHETLQYSVRLEQHFHYTQ 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,314
Number of Sequences: 5004
Number of extensions: 54295
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)