Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a16f
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    29   0.45 
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   3.1  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    27   3.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.1  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   7.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.6  

>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 316 QLFSMLYSLAISLMSSNMVCLTISSSRPCYT 224
           QLFS+LY   +  +S + +C+ IS    C+T
Sbjct: 89  QLFSVLYEETVGYVSMDTLCIAISLLDRCFT 119


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -2

Query: 427 SSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAISLMSSNMVCLTI 248
           SS  +S ++T +     + I Y+S+NCL  + +  L   F + + +         + + I
Sbjct: 314 SSSRNSWIFTLLLTFTQLTIFYLSLNCLIENPYRMLRNTFPIWFIM-------QTLQIYI 366

Query: 247 SSSRPCYTPWR 215
            S RP  TP R
Sbjct: 367 QSPRPPLTPKR 377


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = +1

Query: 124 VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNMV 237
           VNL  K  ++   ++++H+L+    ++I+   K+Y+ +
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYDQI 49


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = +3

Query: 231  HGRLEDMVKQTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTN 410
            H  ++DM+KQ + E +KE +  +++     K   V    +F    K+ +  +    +   
Sbjct: 1637 HDNIDDMIKQQVEEKLKENSANFDV-----KLKKVVAETEFRSKAKISVYEKKTRDLQNK 1691

Query: 411  ELQMEEAVK 437
              Q+EE ++
Sbjct: 1692 ITQLEETIE 1700


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 288 AKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEE 428
           AK   I +SC KYMN D V Q  +M      P G+       + + E
Sbjct: 128 AKNLYICESCLKYMNSDHVLQRHKMKCSWSYPPGDEIYRDKNISIFE 174


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 414  LQMEEAVKVFRVLYYAKDFD 473
            L +E      R +YY+KDFD
Sbjct: 1164 LNLESKSTTLRTIYYSKDFD 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,046
Number of Sequences: 5004
Number of extensions: 48717
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)