Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a10r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    81   1e-16
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    77   4e-15
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    71   2e-13
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    59   8e-10
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    54   3e-08
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    29   0.94 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    28   1.6  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    27   2.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   6.6  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    25   8.7  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 41/106 (38%), Positives = 61/106 (57%)
 Frame = -3

Query: 729 WMSWLIANRRDPGYVPQNSETYYRAIRQIPYYDKWKKRNIILSRLCHTCRCLRPLRAKHC 550
           ++S  IA + +PG +  + + +  A R+ PY  K     I     C TC+  +P R+KHC
Sbjct: 122 YISLYIAAKSNPGKI--DLKNWNEASRRFPYDYK-----IFFPNKCSTCKFEKPARSKHC 174

Query: 549 RICKRCVAYFDHHCPFIYNCVGVRNRMWFFLFVMSVAINCTLSIYF 412
           R+C  CV  FDHHC +I NCVG+ N  +FFLF++     CT+ + F
Sbjct: 175 RLCNICVEKFDHHCIWINNCVGLNNARYFFLFLL-----CTIQLLF 215


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
 Frame = -3

Query: 747 YWNAIMWMSWLIANRRDPGYVPQN--SETYYRAI--RQIPYYDK-----WKKRNIILSRL 595
           Y  A+  +S    +  DPG +P+N  S TY  A     IP   K      +  ++ ++ +
Sbjct: 123 YLYALAVVSMFKCSTADPGILPRNAYSLTYNPAHPWSVIPEDRKVLVGSTRSDSVFVNTV 182

Query: 594 -CHTCRCLRPLRAKHCRICKRCVAYFDHHCPFIYNCVGVRNRMWFFLFVMSVAIN 433
            CHTC   RP RA HC +C  CV Y DHHC ++  C+G RN  ++F+F++SV ++
Sbjct: 183 YCHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVLS 237


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 29/67 (43%), Positives = 39/67 (58%)
 Frame = -3

Query: 603 SRLCHTCRCLRPLRAKHCRICKRCVAYFDHHCPFIYNCVGVRNRMWFFLFVMSVAINCTL 424
           S  C  C  ++P R+ HC  CKRC+  +DHHCP+  NCVG RN   F LFV +++    +
Sbjct: 399 SHYCLKCFQVKPPRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTLIPI 458

Query: 423 SIYFACY 403
             Y A Y
Sbjct: 459 YFYVAFY 465


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = -3

Query: 603 SRLCHTCRCLRPLRAKHCRICKRCVAYFDHHCPFIYNCVGVRNRMWFFL--FVMSVAINC 430
           SR C  C+  +  R+ HC  C +C+   DHHC +  NCVG RN  +FFL  F +++   C
Sbjct: 96  SRFCEKCQEYKCDRSHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFYLNLYSIC 155

Query: 429 TL 424
            L
Sbjct: 156 VL 157


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 20/50 (40%), Positives = 31/50 (62%)
 Frame = -3

Query: 600 RLCHTCRCLRPLRAKHCRICKRCVAYFDHHCPFIYNCVGVRNRMWFFLFV 451
           R+C TC+C  P R+ H R+  RC+  FDH+C F+   V   N+ +F+ F+
Sbjct: 113 RMCGTCKCWLPDRSHHSRVSMRCIRKFDHYCSFVGKDVCFSNQKFFYQFL 162



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = -3

Query: 744 WNAIM---WMSWLIANRRDPG 691
           W A+M   W +W++  RR PG
Sbjct: 268 WRAVMGDHWYNWILPLRRSPG 288


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 621 KRNIILSRLCHTCRCLRPLRAKHCRICKRCVA-YFDHHC 508
           +R  + + LC  C  ++P  A++C+ CK C+  Y+ + C
Sbjct: 175 ERPAVENMLCMICSKVQPA-AQYCKYCKNCMGRYYCNKC 212


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 625 EEEKYYIIKTVSYVSMLKTSESKTLSHLQTLRSVF 521
           EEEK ++    S + ++ +  ++  SHL+TL   F
Sbjct: 684 EEEKLFVEHCHSMIDVIPSKSAEVYSHLETLTKTF 718


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 472 NVVLLVRDERCDQLHIVDLLCLLL-STTRGIRSAVYA 365
           N+ +L RDERC      DL  L+  +    +RSAV+A
Sbjct: 683 NLDVLGRDERCSNFSGADLAALVREAAVTALRSAVFA 719


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 630 KWKKRNIILSRLCHTCR 580
           +++KR  I+  LCHTCR
Sbjct: 907 QYQKRRNIIPPLCHTCR 923


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 693 GYVPQNSETYYRAIRQIPYYDKWK 622
           G+V Q      R +RQIP Y+ W+
Sbjct: 225 GFVYQRVVLNARGLRQIPNYEMWR 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,591
Number of Sequences: 5004
Number of extensions: 66887
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)