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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a04f
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    38   0.001
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    36   0.005
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    34   0.016
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    34   0.016
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    30   0.34 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    28   1.4  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   2.4  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   4.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   5.6  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.4  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   9.7  

>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 250 EKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
           E  P++V L +FSYL   ++C+   + +RW+ +  D  +W
Sbjct: 74  EVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIW 113


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 163 GILN-VDTATIAITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRW 339
           GILN   ++ ++     L S  R   +  +  LP ++   I S+L  R +C+ A V + W
Sbjct: 84  GILNNCSSSLLSFASSTLDSLVR---LDFLSLLPVEISFRILSFLDARSLCQAAQVSKHW 140

Query: 340 RMVAYDTKLW 369
           + +A D  +W
Sbjct: 141 KELADDDVIW 150


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 253 KLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPE 393
           ++P++V  NI SYL   E+   +TVC  WR     T LW  V  + E
Sbjct: 2   RVPNEVCFNILSYLEADELRCKSTVCTSWRNFIIPT-LWEKVVFQNE 47


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 196 ITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
           + RD  S++  R    T+  LP ++L+ IFS+L  R +      C+ W+ +  D   W
Sbjct: 18  MNRDHSSNNTNR----TVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSW 71


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 231 PSKTRR*LISGYRYSRGVHIQNAPRIHDRIQS 136
           PS T R + +G+ Y +   +QN PR  DR  S
Sbjct: 2   PSNTSRSVPTGFYYKQNARMQNRPRFSDRKHS 33


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWR 342
           LP +VLL I   L  + I +   VC+ WR
Sbjct: 139 LPREVLLCILQQLNFKSIVQCMQVCKHWR 167


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 268 VLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
           +LL I +YL +++I  ++  C+    V  D  +W
Sbjct: 13  ILLEISTYLDYKDIVHLSETCKSLSYVFDDKTIW 46


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 390 RPQTNVRP--QFRVVRNHPPSSANSCHT 313
           +P TN+    QFRV+R  PP+S +  H+
Sbjct: 149 QPPTNLETALQFRVIRTIPPNSLDLMHS 176


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 378 NVRPQFRVVRNHPPSSANSCHTTYLT 301
           N  P F  V NH P+++NS   T+ T
Sbjct: 129 NTTPHFPQVSNHAPNNSNSPSLTWHT 154


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 190 IAITRDELSSSFRRRQMTTIE 252
           IA    ELSSS RRRQ T+++
Sbjct: 589 IANAMAELSSSMRRRQSTSVD 609


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 182 VSTFRMPHESMIESNQAKSHYHTNDTQYTRTAPSKTAVHCR 60
           +S +++P ES+ + +   S +      YT   P   A+ CR
Sbjct: 286 ISNYKVPIESLNQPSDQYSFHDAYLQSYTHRYPVHRAIMCR 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,165
Number of Sequences: 5004
Number of extensions: 61995
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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