Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a02r
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    29   0.71 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   3.8  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   5.0  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   8.7  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   8.7  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   8.7  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   8.7  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
 Frame = +3

Query: 198 NGAIQREAKRLIVKNKR-------FERSQVLAFVVEWIDENKELEWESTFSTSRQHESFR 356
           + ++ +   + +V NKR       F + + ++  V+++DE+  L      +   Q    R
Sbjct: 218 SASVSKSENKALVNNKRYSDSYFYFSKMRRISIDVDYVDEDLNL----INAYLSQFGKKR 273

Query: 357 HVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFIRI--ADNLVLTSGEFS 506
            + EL   + R FS   + H FS W  +F  +  FI     D  +L+  E S
Sbjct: 274 SLNELCALLSRRFS---NRHTFSEWRALFMHFFPFINSEGVDPAILSDRETS 322


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 124 GNRSPSW*MKISLKYMLG-TLNNASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKT 300
           GN  PS+  K S  Y  G   NN+       G PR   SR   +        +SNG +  
Sbjct: 308 GNSHPSY-NKYS-HYQHGFNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSAN 365

Query: 301 KSWNGNPPSVPLGS 342
           +S   NP +V  GS
Sbjct: 366 QSPRNNPQNVNNGS 379


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -3

Query: 602 VKIFLAPKYDDNGIPLTLEDNWMKFF----ELDWFTTKLTAGQNKI 477
           ++IFL P    +G+    +D W+ F+    E DW       G N +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = +1

Query: 187 NASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKTKSWNGNPPSVPLGSMSLLGM*Q 366
           +A TTG S GKP G  + T   KG  +      G +  K       + P    S      
Sbjct: 264 SAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTGFSFGKPATTEDTNKPTAPNSAFTKPA 323

Query: 367 NSSDISKGTF 396
            S+  +K TF
Sbjct: 324 TSTGDNKPTF 333


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 656 SPFNVNIEVDSNVASDAVVKIFLAPKYDDNGIP 558
           S F V++ VD +VAS   +    AP   DN  P
Sbjct: 113 SAFTVSVPVDVDVASHVNISSPSAPSLSDNLFP 145


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 465 RIADNLVLTSGEFSCEPV 518
           RI D LV+T+G+ S EP+
Sbjct: 59  RIEDTLVVTAGQTSSEPI 76


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 12  FLHFLWILRMQNSSVYLNLI-FWNNIRLCVIRRNIEFVREPFTL 140
           FL   W+   Q   +  +LI  WN I  CV+   IE VR   T+
Sbjct: 91  FLKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRSIATI 134


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 558 RYSVVIVFGSQEDFDNSVTGDIRINLNVNVE 650
           R ++V+V G  + FD  +T  +  ++N N++
Sbjct: 375 RSAIVLVRGLLDHFDQKITSVVSTHINANLQ 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,824
Number of Sequences: 5004
Number of extensions: 69464
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)