Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a10r
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    28   1.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   1.5  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    26   4.6  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   4.6  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    26   6.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.0  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -1

Query: 564 TIKKNWSSIRNRFSSSPRAANERSATTANGTTPEEVPLQEKSP 436
           +IKKN SSI  RFSS  R  N+ S +T   + P E      +P
Sbjct: 592 SIKKNPSSIFRRFSSR-RKQNKSSTSTLQISAPLETSQSPPTP 633


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 601 DDSRYGGNSSRHYNQKELE-FHQKQIQFITKSSK 503
           DDS YGG   +   QK+   + Q +I+F +++SK
Sbjct: 122 DDSSYGGTPKKRSRQKKSNTYVQDEIRFSSRNSK 155


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 506 QMNVQLQLLMGPLQKKCLCKKSHLFKHCF*ECSV 405
           + + +LQLL+  LQ++    KS L  H   +CSV
Sbjct: 47  EQSKRLQLLLSQLQQEAFRLKSQLLAHQGCQCSV 80


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 529 SVSDGTPILFDCNACYYYHHTG 594
           S + G P+  +C  C Y HH G
Sbjct: 343 SNASGPPVSANCEHCGYVHHVG 364


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 583 GNSSRHYNQKELEFHQKQIQFITKSSK*TFSYNC*WD 473
           GNS+  Y+   + FH +   F T  S  TFS+   WD
Sbjct: 249 GNSADVYSVNSIAFHPQYGTFSTAGSDGTFSF---WD 282


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 541  GTPILFDCNACYYYHHTGYHHPN 609
            GT + FD    +YY H G+H  N
Sbjct: 1315 GTQLPFDRFLSFYYAHPGFHINN 1337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,708
Number of Sequences: 5004
Number of extensions: 48234
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)