Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a08r
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    30   0.32 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.0  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   7.0  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   9.2  

>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = -2

Query: 757 AVFVNN--YYNLHLFILSCY*SVHNMASFHKV--IVIIGFLSLFHTAFSATQHRSYLRIT 590
           A+F  N  Y   HLF+ S +  V+N+   H     V    L+  H  +  +   SYLR+T
Sbjct: 126 ALFERNARYSTSHLFLPSDFLQVNNLEIIHLPPGTVDSDILASCHARYICST--SYLRMT 183

Query: 589 SQEFT---TLPLDI 557
           S +FT   TL LDI
Sbjct: 184 SSDFTTADTLVLDI 197


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = -2

Query: 607  SYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKWETQNNLP 428
            SY+  + QE  + P ++    ++++F+  W +  V   L  I     L    WE+  N+P
Sbjct: 2078 SYIDRSMQECHSFPHEVYPLGLIAVFS--WPLALVM-LLFAILLIFGLPDYYWESPGNIP 2134

Query: 427  SFYIFNHRGKALSYDYVPT 371
            +FY    R K + + +V T
Sbjct: 2135 AFYTALLRRKLVLWFFVAT 2153


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -2

Query: 760 IAVFVNNYYNLHLFILSCY*SVHNMASFHKVIVIIGFLSL---FHTAFSATQHRSYL 599
           I++F+     ++LF +  Y  V  + S  KVI  +GF+ L    +     T HR Y+
Sbjct: 193 ISIFLAVVIVINLFGVRAYGEVEFILSTIKVIATVGFIILAIIINCGGVPTDHRGYI 249


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
 Frame = -2

Query: 643 LFHTAFSATQHRSY-LRITSQEFTTL--------PLDIVIQAVVSLFAVMWG 515
           LF+TAF  ++H S   R  ++E ++L         +D +  AVV LFA++ G
Sbjct: 414 LFYTAFMGSEHSSKETRSRAKELSSLIGSYHTDVNIDTMTSAVVKLFALVTG 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,488
Number of Sequences: 5004
Number of extensions: 60001
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)