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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B12
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual   127   1e-30
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    31   0.11 
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    30   0.25 
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    29   0.44 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   2.4  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   3.1  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   5.5  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    26   5.5  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   5.5  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   7.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   7.2  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score =  127 bits (307), Expect = 1e-30
 Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 4/185 (2%)
 Frame = +2

Query: 110 LKDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLKT 289
           LK+F  EKIL ++T  K   + GK +++  VAL+L EK AF  N +  +   +     K 
Sbjct: 12  LKEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTIKLDQLATFLQDTKL 69

Query: 290 FFENDIYGNFEC--FPP-STINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTL 460
              ND++  F    F   ST+  VK+T+I+PA++ H+ K+S Q+  +V ETPE+Y K+T 
Sbjct: 70  VENNDVFHWFLSTNFQDCSTLPSVKSTLIWPASETHVRKYSSQKKRMVCETPEMYLKVTK 129

Query: 461 PHLEKEQF-NLQWVYNILXGKSXQXRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIV 637
           P +E ++   +QWV NIL  K+   RIV ++     GF+++PDLKWD  T   L L+AIV
Sbjct: 130 PFIETQRGPQIQWVENILTHKAEAERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLMAIV 189

Query: 638 RQRDI 652
              DI
Sbjct: 190 HATDI 194


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 65  LTMKTATTLNDNQLELKD---FVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFK 235
           L ++ +  +  N  +LKD   FVLE+ L  N   KT    G+   K+GV L+   K  + 
Sbjct: 412 LRLEQSEGIPRNIQDLKDHPLFVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YV 469

Query: 236 ENDLSEEGYFSKETQLK 286
            N  S E ++ K   +K
Sbjct: 470 SNGFSAEHWYRKGRIIK 486


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 302 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 403
           D+Y ++     S INGV  ++IYPA +  I+K S
Sbjct: 34  DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 237 SLKAFFSNRISATPLLSLNFPTTQAVFLLVLLFNIFS 127
           S+K FF     A+PL ++NFP   A+F+     N+FS
Sbjct: 268 SMKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 329 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTL-PHLEKEQFNL 490
           PPS +N  +T + +    + + K++++++ +    PE +  L L P+ E + F +
Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 255 SSLRSFSLKA-FFSNRISATPLLSLNFPTTQAVF 157
           S L++++++  FFSN  S+  L   +FPT ++ F
Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAF 166


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 268 QRNSAENVFRERYLRKLRVFPAFDYKR 348
           +R SA +  R+R++RK+RV    D +R
Sbjct: 156 ERRSAMDGLRDRHIRKVRVSQLLDLQR 182


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 137 IFSPKQSLSILTDCHLELLPFSLSIFN--LLQRCSL 36
           I   +Q  S+L DCH E+L  +L  FN  LL+ C L
Sbjct: 75  IIKNEQLGSVLHDCHAEIL--ALRCFNRLLLEHCIL 108


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 355 FHTVYSRRRETLEVSVNIVLEKRFQLSFFGEI 260
           FH  + ++RET+ V+ N +   +    FFGEI
Sbjct: 704 FHQQWDKQRETISVAENDLRICQKARKFFGEI 735


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 428 ETPELYKKLTLPHLEKEQFNLQWVYNILXGK 520
           + P  Y  LTLP+L  E+  LQ++  +  G+
Sbjct: 253 DLPPAYSTLTLPNLPSEE-GLQFIQKVFKGE 282


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 116 LSILTDCHLELLPFSLSIFNLLQRCSLTSSFR 21
           LS L + H EL+     ++N  + C+L   F+
Sbjct: 268 LSCLKNTHQELIKLETEVYNATKNCTLFQFFQ 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,415
Number of Sequences: 5004
Number of extensions: 58730
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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