Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B03
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    29   0.91 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   2.1  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    27   2.8  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    27   4.9  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   4.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   6.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   8.5  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   8.5  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +1

Query: 223 WKPEPEYIQKPDNLLLPENISSL-WKWL----KFFGPKKNLIDSVTAHKENHQK 369
           WK E E +    NL +P+N+SSL + W     + F  + +LID +  ++   +K
Sbjct: 270 WKSEHESVLNRGNLQVPKNVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKK 323


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 520 WSPDCSFVVLAYGNGVVGFFDLTASNLFNIPIECSRPEGLECSDNTHAV 666
           ++P C    L   N ++G F  T  N+++I  EC   E L C   T A+
Sbjct: 811 FTPVCIGASLYCNNAMIGPFTKTGLNIYDIREECRDQEHL-CYPETGAI 858


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 448 SDYATIAARTTVNRDPYSQWRKLVWSPDCSFVVLAYGNGVVGFFDL 585
           +D  +++A    +   Y    K  WS D SF+ +  GNG+V  +D+
Sbjct: 207 ADSGSVSALAETDESTYVASVK--WSHDGSFLSVGLGNGLVDIYDV 250


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 208 YVYSEWKPEPEYIQKPDNLLLPENISSLWKW 300
           +  S W   P  ++KP N +L E  +  WK+
Sbjct: 92  FYMSGWHIRPRGVKKPLNPILGETFTGFWKF 122


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 376 YATFGGFLYEQLHCLLNSSWVQKI*ATSIKMICFLVVVSYQVFE 245
           Y T    +Y  L+C+L S    K+    I  + +L  + +++FE
Sbjct: 801 YFTKESHIYTLLNCILESGLPMKLPRNQIPELDYLTQICFELFE 844


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 215 IRNGNLNQNIFKNLITYYYQKTYHL 289
           I NG LN+N+  ++I   ++  +HL
Sbjct: 574 IENGQLNRNVLVHMILTQFRDVFHL 598


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 650 SEHSKPSGLEHSIGILKRFEAVKSKKPTTPFPYARTTKEQS 528
           S H  P+ +++S  + K   + + + PT+P  +A T  + S
Sbjct: 52  SNHDTPADVDNSSNVNKNSSSPERELPTSPSHHANTEIDSS 92


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 7   FXYXFHYRESLRFILILVFLELIGT*NYFLKLTKI 111
           F     YR  L F L+++F ELIG   YF   T++
Sbjct: 258 FGKDIRYRTCLGF-LVMLFRELIGNNYYFYYATQV 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,682,714
Number of Sequences: 5004
Number of extensions: 80570
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)