Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B01
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   2.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.7  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   8.2  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   8.2  

>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 144 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 290
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -3

Query: 262 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 92
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 232 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 104
           N S+  F L A+       +  S  +N C LA+++   ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 278 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 391
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,829
Number of Sequences: 5004
Number of extensions: 34089
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)