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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A11
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   4.8  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.8  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   4.8  
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    26   6.3  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    26   6.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.3  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   8.3  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    26   8.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.3  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 244 LIPNNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLN 357
           +I N  P  + +   S+ ST   V  PPP P +L+ +N
Sbjct: 250 IIDNEIPKPSESPRRSVSSTPP-VHPPPPVPQNLSAVN 286


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 488 IVVHHKLGETPEFNVSVRK 544
           +V HH+L + PEF  SVRK
Sbjct: 226 LVNHHRLFQIPEFQDSVRK 244


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 505 FMMYHNSM*KKKLSYMLRVF*TIRFCQISILLAATVVV--VRQVSWDPSMS 359
           F +  NS  KK+ + + R+F T+ F   ++ LA   +   VR VS D S+S
Sbjct: 2   FSILGNSSKKKRNTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSDSSVS 52


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 250 PNNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLNYSSK 369
           P    +EA +  A I  ++ S+ TP P+ S L   NYS++
Sbjct: 383 PQASCTEAVSLTADIDLSKSSLATPRPKLSSLLYENYSNQ 422


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 506 IYDVPQFDVKKKIKLHATSILNYSVLSDFNPP 411
           +Y +   DV+     H  S++   ++ DF+PP
Sbjct: 178 VYQIKVIDVQPDDSRHVVSVVETDLVVDFDPP 209


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 265 SEAPATEASIQSTEKSVQTPPPE 333
           +E PA + + +ST+K    PPP+
Sbjct: 158 TETPAPKVTSESTKKETAAPPPQ 180


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +1

Query: 211 PLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEPS 339
           P T+        IP  G S  P T     ++  S  TPPP  S
Sbjct: 279 PTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 247 IPNNGPSEAPATEASIQSTEKSVQTPPPEPS 339
           IP  G S  P T     ++  S  TPPP  S
Sbjct: 345 IPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 375


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 184 SFPNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEP 336
           +FP+     PL +      P +P + PS +P+T     ++  S    P  P
Sbjct: 188 AFPSSFSSLPLVSSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAP 238


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 82  FGSPAYGGFSQIGPYPYSFPGLRF-YDPFDSFSINSFPNFPLYRPLTNVLGQNVPLIPNN 258
           + SPA  G + +G YP+    L    D     +I ++ + P+   +T  L  +   +P  
Sbjct: 123 YASPAEPGTAPLGTYPHPCVHLTVNTDVSSPLAIKTYVSSPV--GITERLADSCAFVPT- 179

Query: 259 GPSEAPATEASIQSTEKSVQTPPPEPSDL 345
            P      EA ++S  K+V  P  +PS L
Sbjct: 180 -PFTIRDDEA-VRSGLKAVAAPKNDPSRL 206


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
 Frame = +1

Query: 46   PPQVLPIGRLDGFGSPAYGGFSQIGPYPYSF-PGLRFYDPFDSFSINSFPNFPLY----- 207
            PP  L  G++D   S A+     +   P  F P      P   F  N F  FP       
Sbjct: 737  PPPGLRFGKVDTLASLAHDDLDDLPAVPRIFSPPPLPKTPSGEFGDNEFM-FPKKSNRVR 795

Query: 208  ----RPLTNVLGQNV-PL-IPNNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLN 357
                RP T    +NV P+ I  +G   A   E +  S+      P P P+D N LN
Sbjct: 796  GHQSRPSTGSQLRNVVPVSIVTSGGRPALPDEMASPSSSIGHPLPSPPPADFNSLN 851



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 190  PNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEP 336
            P+ P   P++N+L       P + P  AP ++    S    +   PP P
Sbjct: 967  PSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVP 1015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,650
Number of Sequences: 5004
Number of extensions: 51502
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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