Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A02
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 104 1e-23
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 95 2e-20
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 38 0.003
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 34 0.023
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 29 1.2
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 28 2.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.2
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 26 6.2
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 26 8.2
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 8.2
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 8.2
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 104 bits (250), Expect = 1e-23
Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Frame = +3
Query: 252 FMKGVPDAPRCGFSNAVVQIMRMHAVPYE---SHDVLSDENLRQGIKDYSNWPTIPQVFI 422
FMKG P P CGFS +QI+ + V + +++VLS++ LR+GIK++S+WPTIPQ++I
Sbjct: 41 FMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQLYI 100
Query: 423 NGEFVGGCDIMLQMHQSGELIEELKKVGIKSALLTAEEAKQGEKK 557
NGEFVGG DI+ MH+SGEL + LK++ L E+ K E++
Sbjct: 101 NGEFVGGSDILASMHKSGELHKILKEIN----ALAPEQPKDSEEE 141
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 94.7 bits (225), Expect = 2e-20
Identities = 40/81 (49%), Positives = 59/81 (72%)
Frame = +3
Query: 252 FMKGVPDAPRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGE 431
F+KG P P CGFS +V ++R V Y ++L+D+++RQG+K +S+WPT PQ++I GE
Sbjct: 162 FLKGTPSEPACGFSRKLVGLLREQNVQYGFFNILADDSVRQGLKVFSDWPTFPQLYIKGE 221
Query: 432 FVGGCDIMLQMHQSGELIEEL 494
FVGG DI+ +M ++GEL E L
Sbjct: 222 FVGGLDIVSEMIENGELQEML 242
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +3
Query: 282 CGFSNAVVQIMRMHAVPYESHDVLSDEN---LRQGIKDYSNWPTIPQVFINGEFVGGCDI 452
C F A + ++ PY+++++ EN ++ + + + T+P +F +F+GG
Sbjct: 26 CPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSD 85
Query: 453 MLQMHQSG---ELIEELKK 500
+ ++ SG ++I ELK+
Sbjct: 86 LNKLRSSGTLTKMIAELKE 104
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 34.3 bits (75), Expect = 0.023
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +3
Query: 276 PRCGFSNA----VVQIMRMH--AVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFV 437
P C +S A + + +R+ AV E D + LR + S+ T+P +F+ G +
Sbjct: 74 PGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIFVGGHSI 133
Query: 438 GGCDIMLQMHQSGEL 482
GG D + ++Q +L
Sbjct: 134 GGSDSVRALYQEEKL 148
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +3
Query: 276 PRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIM 455
P C + V+ ++ A Y+ + + + ++ + + T+P +FI+ + VGG
Sbjct: 26 PYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDF 85
Query: 456 LQMHQSGEL 482
+ + GEL
Sbjct: 86 QALFKKGEL 94
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 366 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALLTAEEAK 542
L G++D+ ++ I + + VG +Q +Q+G +++ELKK + +K+++L K
Sbjct: 220 LAAGLRDWVDFGVICALLLLNATVG----FVQEYQAGSIVDELKKTMALKASVLRDGRVK 275
Query: 543 QGE 551
+ E
Sbjct: 276 EIE 278
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 550 SPCFASSAVKSALFIPTFFSSSMSSPDWCICSIMSQPPTNS 428
SP SS + S+ + FSS++SS S S PT+S
Sbjct: 299 SPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 386 IFYTLSKIFITQHIMALVRNCMHPHNLNNSIT 291
I YT S F+T + +R C H N +T
Sbjct: 2526 IKYTTSSFFLTDDFVRFIRVCFHSRISGNLLT 2557
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 690 YFNFNNYVFVSIQYHHLK*IKTIISNTNRKLQN 592
+F+F + + + Y+ L K++I +TN LQ+
Sbjct: 585 HFSFRSQILICWCYYRLNDFKSLIQHTNNLLQS 617
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 678 NNYVFVSIQYHHLK*IKTIISNTNRKLQNQIHNT*DGYFNFSSPLALPLQLLK 520
++Y VSIQ+ L + + +QN + T Y N + L L L +K
Sbjct: 209 SDYEDVSIQFDRLASLDQALDVPIESIQNALQQTGTEYANLTEKLTLLLDTIK 261
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = -3
Query: 747 TKNRHTFNKFLLHQRFLHKY-FNFNNYV----FVSIQYHHLK*I-KTIISNTNRKLQNQI 586
+KN+ +++ + + + K F +V F S ++ H + + ++ N N+K + I
Sbjct: 28 SKNKRNYHQLTIFRSKIGKGDLRFGTFVDVGKFQSWKWRHWGCVTERVLRNVNKKFEGDI 87
Query: 585 HNT*DGYFNFSSPL 544
N DG+ + P+
Sbjct: 88 KNCLDGFNELNDPI 101
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 468 QSGELIEELKKVGIKSALLTAEEAK 542
+ GE ++E++K+GI+ A AEE++
Sbjct: 298 RKGEDVQEIEKIGIEIAKARAEESQ 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,222
Number of Sequences: 5004
Number of extensions: 54950
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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