Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B10
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    29   0.44 
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    27   1.4  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   5.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.2  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    25   9.5  

>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 134 GMISHQLLGRCQKEEARYMDCLEAYGLERGKVKCAHLFGDY 256
           G+I + L+    K EA Y D  EA+ L +   +C ++FGD+
Sbjct: 84  GLIIYALVTSIWKGEAHYGD--EAFELLKANEECRYVFGDH 122


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 180 ASSFWQRPRSWWEIMPPVTSVN 115
           A++ W   ++WW+I PP+  VN
Sbjct: 203 AAAIWATGQTWWQI-PPIARVN 223


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 372 RGLTYFSSPVSFP*EICLCLSCLIAKNLLSCLV 274
           R L Y  S + +   +C C+SC +A+N    ++
Sbjct: 146 RKLVYIGSLIIY---VCFCISCALARNYAQLVI 175


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 168 WQRPRSWWEIMPP 130
           W+R RS W+I PP
Sbjct: 128 WKRKRSLWDIKPP 140


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +2

Query: 206  YGLERGKVKCAHLFGDYHECSTLTKQLKRFLAIRHERQRQIS 331
            + +  GK++C H  G++   S L ++   ++   H+ +R I+
Sbjct: 1324 FEITMGKLRCLHALGEWDRLSQLAQE--NWIHAGHDARRYIA 1363


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
 Frame = +1

Query: 112 TVYGCYWWH----DFPPTSGSLPERGSQIHGLSRSLWFGTRKGQV 234
           TV G   WH    D   TS S            R +WFGTR G +
Sbjct: 486 TVTGLCHWHMPLGDTKVTSLSFKSSPENYSDDGRFVWFGTRDGML 530


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 115 VYGCYWWHDFPPTSGSLPERGSQIHGLSR 201
           V  C  W D  P +G   E+GS +  ++R
Sbjct: 213 VQDCAMWPDGYPGTGRESEKGSNLEAITR 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,712
Number of Sequences: 5004
Number of extensions: 37031
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)