Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B03
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.094
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   6.2  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    25   8.2  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 31.5 bits (68), Expect = 0.094
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 587 PANPFXPVLPLSPLGPRGPCGPI*PFCPLGPCAPSAP 477
           P  P  PV+P  P  P+ P  P+ P  P  P  P+AP
Sbjct: 635 PQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAP 671



 Score = 31.1 bits (67), Expect = 0.12
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 587 PANPFXPVLPLSPLGPRGPCGPI*PFCPLGPCAPSAP 477
           P  P  PV+P +P   + P  P+ P  P  P  P+AP
Sbjct: 515 PQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAP 551


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +1

Query: 205 EVAPDTERPYAVNQYGLYNRNDIPPQSRPEPELGQNFAVYDPDTRQRTSTAINRNCTAPG 384
           EV  D +R    +QYG+   N  PP    E   G  F  + P      +   + N   PG
Sbjct: 53  EVLSDPQRRKLYDQYGITEGNAAPPPPGAEGGPGAGFGGF-PGAGPGGARTFHFNMGGPG 111


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 403 FAEKGNRGFPGSPGPQGPRGLPG 471
           + E+G  G PG PG     G PG
Sbjct: 71  YGEEGLNGQPGGPGGGPGEGFPG 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,168
Number of Sequences: 5004
Number of extensions: 48571
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)