Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A11
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    27   1.2  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   3.7  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    25   4.9  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    24   6.4  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    24   8.5  

>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 139 SSGIPSLDHIVGGGIPAGSIFVV 207
           SSG  S D+ + GGIP  S+ V+
Sbjct: 32  SSGSSSFDYYLSGGIPMKSLLVI 54


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 995

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = -2

Query: 269  LFIKFV-----LALRYYAILKEIHEPTTKMLPAGIP 177
            LF+KFV     L++  Y  L ++HEP +K+   G+P
Sbjct: 910  LFVKFVANGDSLSIESYGDL-QVHEPLSKITIIGLP 944


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -2

Query: 275 PYLFIKFVLALRYYAILKEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGRLFFTFV 108
           P+L  +   AL   +I  E  +  +     G+ P  +W + GIP+     L   F+
Sbjct: 179 PHLDSRAAAALLLQSITTEARQQMSLRQLQGLFPYPVWFETGIPQSFAWSLIAPFI 234


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 133 YVSSGIPSLDHIVGGGIPAGSI 198
           Y+++G   LD  + GGIP G +
Sbjct: 74  YLTTGDVKLDETLHGGIPVGQL 95


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 220 KFTNLQQKCCLQVFLHQLYGLRMEYR 143
           +   +    C++VF+H++ GL  E++
Sbjct: 103 RVVTINPNICIEVFIHKVDGLSDEFK 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,618
Number of Sequences: 5004
Number of extensions: 24865
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)