Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A06
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   2.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    23   8.6  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    23   8.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    23   8.6  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 146 IDHVTAHCTICLLKTTMFQYQGSDAYNCTHYSKRYYAI 33
           I  +  +C++ L  + MF   GSD Y      + + AI
Sbjct: 706 ITQIYLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAI 743


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 202  LNCFYYYCCFFVGTHSCGI 146
            L CF  +CC F G   C +
Sbjct: 1848 LLCFQSHCCSFNGIGECNL 1866


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 199 NCFYYYCCFFVGTHSCGILIMSLHTALSAY*KLPCSSTKGAML--IIAHIIPNVITLL 32
           N FY   C F+ +    ILI +L T      +L  +     +L  + +++I N+I L+
Sbjct: 383 NVFYLALCEFLNSSDYSILIATLRTLA----RLALNDRNNRLLQDLKSNVIANIIALV 436


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 113  LLKTTMFQYQGSDAYNCTHYSKRYYAIDSVTRVL 12
            +++T   +Y G +  N  HYS   YAI+   R++
Sbjct: 908  VIQTIRTRYHGMNCQNLIHYSFS-YAIEFAQRLM 940


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 837,160
Number of Sequences: 5004
Number of extensions: 13157
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)