Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0016
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    58   2e-09
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    55   1e-08
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    48   2e-06
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    36   0.005
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    33   0.059
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    31   0.18 
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    27   3.9  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   6.7  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   6.7  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   8.9  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   8.9  

>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
 Frame = +2

Query: 260 DH-WKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEED 436
           DH W  Y+K+N+ FA+  V      N ++ D      ++W++DYHL+L    +R+R    
Sbjct: 300 DHSWANYVKVNKAFADTIVD-----NYEQDD------MIWINDYHLLLVPEMVRERLP-- 346

Query: 437 EIKCKLAFFLHIPFPPWDIFR 499
             + K+ FFLHIPFP  ++FR
Sbjct: 347 --RAKIGFFLHIPFPSSEVFR 365



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = +1

Query: 517 EVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRKNLLV 642
           E+L+G+LG +++GF I ++  +F+  C R +   + RKN +V
Sbjct: 372 EILKGMLGANILGFQIPEFAYHFLQTCSRLVNIDI-RKNGVV 412



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +3

Query: 177 FDSYYNGCCNGTFWPLFH-SMPD 242
           F  +YN  C    WP FH  +PD
Sbjct: 269 FVGHYNHYCKNILWPTFHYQIPD 291


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 31/87 (35%), Positives = 45/87 (51%)
 Frame = +2

Query: 248 HFLADHWKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRA 427
           +F  ++W+AY   N  FAE  V      N Q  D      ++WV DYHLM+    +R+  
Sbjct: 124 NFDEENWEAYRAANYAFAEAIVK-----NLQDGD------LIWVQDYHLMVLPQMLRELI 172

Query: 428 EEDEIKCKLAFFLHIPFPPWDIFRLFP 508
            +     K+ FFLH PFP  +I+R+ P
Sbjct: 173 GDKFKDIKIGFFLHTPFPSSEIYRVLP 199



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +1

Query: 502 VPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNL 609
           +P  +E+L+G+L CD+VGFH  DY  +F+  C R L
Sbjct: 198 LPVRNEILEGVLNCDLVGFHTYDYARHFLSACSRIL 233



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 45  WVGWPGIHLEDPNEKIPESDPNDKTPTAGLRSE-KIVPIRAEPKLFDSYYNGCCNGTFWP 221
           W+GW G       ++IPE +         L+ E   +P+  + +  D +YNG  N   WP
Sbjct: 64  WLGWCG-------QEIPEDEK--PMIIQRLQDECSAIPVFLDDETADRHYNGFSNSILWP 114

Query: 222 LFHSMPDRATF 254
           LFH  P    F
Sbjct: 115 LFHYHPGEINF 125


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 25/81 (30%), Positives = 40/81 (49%)
 Frame = +2

Query: 263 HWKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEEDEI 442
           +W  Y+ +N  FA+  +         K  K G    +WV+DYHL+L  N +R+R      
Sbjct: 264 NWDDYVAVNRAFADALI---------KNYKTGDT--IWVNDYHLLLVPNMVRERIP---- 308

Query: 443 KCKLAFFLHIPFPPWDIFRLF 505
              +  F+H+ FP  ++FR F
Sbjct: 309 SAIIGLFIHVSFPSSEVFRCF 329



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +1

Query: 517 EVLQGILGCDMVGFHIEDYCLNFIDCCQRNL 609
           E+LQG+LG +++GF  E+Y  +F+  C R L
Sbjct: 334 ELLQGMLGSNLIGFQTEEYKRHFLQSCSRVL 364



 Score = 29.5 bits (63), Expect = 0.55
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 45  WVGWPGIHLEDPNEKIPESDPNDKTPTAGLRSEKIVPIRAEPKLFDSYYNGCCNGTFWPL 224
           WVG  G+    P E + E   N  +    ++ + +V   ++   F+ +YN  C    WP 
Sbjct: 193 WVGLLGM----PTESLSEKTKNAISGALLVKHQSLVVYTSDSN-FEGHYNHYCRKILWPS 247

Query: 225 FH 230
            H
Sbjct: 248 LH 249


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 26/81 (32%), Positives = 36/81 (44%)
 Frame = +2

Query: 266 WKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEEDEIK 445
           W+ Y+K+N  FA+K              K G    + V DY L L    IR + ++  I 
Sbjct: 190 WRDYVKMNHAFADKICEIY---------KPGD--FIIVQDYSLFLVPQLIRNKIDDAVI- 237

Query: 446 CKLAFFLHIPFPPWDIFRLFP 508
               F+ H PFP  +I R FP
Sbjct: 238 ---GFYHHHPFPSSEIARCFP 255



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 505 PGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRV 621
           P    +L+ +LG D +GF    Y  +FI CC R L   +
Sbjct: 255 PRRRAILRSVLGADFIGFEDYSYARHFISCCSRVLDLEI 293


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 32.7 bits (71), Expect = 0.059
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 368 IVWVHDYHLMLAANWIRQRAEEDEIKCKLAFFLHIPFPPWDIFR 499
           ++ +HDY L L    IR++  +  I     FFLH PF   ++FR
Sbjct: 220 LILIHDYSLFLLPRLIRKQLSDAPI----VFFLHAPFCTSEVFR 259



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 517 EVLQGILGCDMVGFHIEDYCLNFIDCCQRNLG 612
           E+L+G+L  +++    + Y  +F+  C   LG
Sbjct: 266 EILKGVLASNVIAMQTDSYTRHFLSTCSNVLG 297


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 651 SQFDQKIFSIDTATQVSLAAVNEIQTVILYVESHHITTQNSLQNFIRPGNSLKISH 484
           SQF   +  I T++++ L   NE     L VE   +TT+  + N +R    +++ H
Sbjct: 468 SQFIDSLLHIKTSSELYLPLANEFIPWSLEVEKQPVTTKLKVPNLVRNDKFVRLWH 523


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 690 LRSVSGLTQMVRXSQFDQKIFS-IDTATQVSLAAVNEIQTVILYVESHHITTQNSLQNFI 514
           +++VS +  + R    D  I + I  A +  LA  N +Q +I  VESHH T+Q    N+ 
Sbjct: 132 MQTVSNIVNLHRLKSMDSDIHALISMAVRDYLA--NLLQKMI--VESHHRTSQLHTDNYK 187

Query: 513 RPGN 502
           +  N
Sbjct: 188 QVDN 191


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 397 HQMVVVNPHDRWTSIFVFLLFVQQMESVDCLLSKLLVY 284
           H+ +VVN H     +  F++ +  +  V C+L   LVY
Sbjct: 141 HERIVVNSHMLLFYLKPFVIALPVLIGVTCILLSFLVY 178


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 231 NETTARMSRYSIHCSSYRKV*VPREWGLFSPNAGQRL 121
           N  +  MSRY  H S+Y K  V     L   N+GQ +
Sbjct: 320 NNESYEMSRYEKHLSAYEKANVKVASSLAFLNSGQAI 356


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 168 PKLFDSYYNGCCNGTFWPLFHS 233
           PKLFD+Y         W  FHS
Sbjct: 134 PKLFDTYEENSIMNHCWVFFHS 155


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 559 GIPPYHNPKFPAKLHQTRE 503
           G PPY  P  P+KL  TR+
Sbjct: 581 GPPPYVRPSAPSKLPDTRQ 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,186
Number of Sequences: 5004
Number of extensions: 77426
Number of successful extensions: 236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)