Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0004
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    27   2.5  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   3.3  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    27   4.4  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   5.8  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   5.8  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   5.8  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   7.6  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   7.6  

>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +1

Query: 40  SAEDVATEKTQ--KSLF-DGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKE 183
           ++EDVA+++T+  K++F DG+ K ++     T  ++K    D+DA  A  E
Sbjct: 22  ASEDVASKQTEEAKAVFGDGVAKQENKSGASTNDEKKPAEGDEDAEPASPE 72


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 94  EKFDSSQLKHTETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHTETCEKTRSPQR 273
           + FD   +K    +EK  L +     AE EK++  N +E+   +  +           + 
Sbjct: 74  KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVANARKET 133

Query: 274 TSLSKR-NQLEPLLYNS 321
            +  KR NQL+  L ++
Sbjct: 134 VASEKRVNQLKKQLVDA 150


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 266 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 406
           HKG +  +E+++  Y+  VTRK I   + P +  + SQ I+   PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
 Frame = +1

Query: 16  TNEKIVLPSAEDVATEKTQKSLFD--GIEKFDSSQLKHTETQEKNPLPDKDAIXAEKEKN 189
           T +  +LPS  + +  K  ++     G E  D+   ++  T+ + P+P   +     E+ 
Sbjct: 272 TPKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVTTKPEPPVPFTSSEYRNTEEE 331

Query: 190 KFLNGIEN-FDPTKLKHTETCEKTRS---PQRTSLSKRNQLEPLL 312
           ++LN I    +  + +   T   TRS   P +   S RN   PLL
Sbjct: 332 QYLNLIRYILENGQSRPDRTGTGTRSVFAPPQLRFSLRNNTLPLL 376


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 296 SLNHYFITVTRKCISLVSPYFNIDVSQIDLRRPLQVLFLFLYNGNPAWAMATYSNPGFYS 475
           +LN Y I+     +   SP   I   +I    PL +      +GNP   + +   PG YS
Sbjct: 218 NLNRYDISPAAFILKSGSPSLQIHSVEIPWVEPLALADCIQKSGNPICFLDSAKKPGRYS 277


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 1   GRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEK-NPLPDKDAIXAE 177
           G   D ++K+V      +  E  ++ LF      ++   +++ T+E  NP+ D  ++  +
Sbjct: 412 GEREDVDKKVV-EFLNPLVLELQERLLFVVQTAIETDIQRYSPTEEDLNPIADDKSLLFD 470

Query: 178 KEKNKFLNGIENFDP 222
            EK +  N  E  DP
Sbjct: 471 LEKLRLNNDEEKLDP 485


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 464 RGCCTSPLPRQGCHCTK 414
           R C +SP PRQG  C K
Sbjct: 71  RDCPSSPNPRQGAECYK 87


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +1

Query: 28  IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 156
           + L S ED+ +  T+ S+   + +    +++HT  + K  +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,873
Number of Sequences: 5004
Number of extensions: 51194
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)