Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0002
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    75   2e-14
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    73   5e-14
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    40   3e-04
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    33   0.067
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    31   0.21 
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    29   1.1  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      28   1.4  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    27   3.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   5.8  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    26   5.8  
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces...    26   7.7  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   7.7  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    26   7.7  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   7.7  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 35/91 (38%), Positives = 59/91 (64%)
 Frame = +1

Query: 238 IQSECDHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 417
           ++SE +   Q   +P       ++ +I   +++L A++K N +A  +  FL K+ DV   
Sbjct: 35  LKSEVEE-EQGFSTPCLTHEGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFID 93

Query: 418 YFGKISEENIKNNFVLIYELLDEILDFGYPR 510
           YF ++ EE+I++NFVL+YELLDEI+DFG+P+
Sbjct: 94  YFKELQEESIRDNFVLVYELLDEIMDFGFPQ 124



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +2

Query: 146 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 241
           M   +FV N KG+V+ISR YR DI  + V+ F
Sbjct: 1   MASAIFVLNLKGKVIISRDYRADIPMSVVEKF 32



 Score = 29.1 bits (62), Expect = 0.83
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 614 LXWRREGIKYRRNELF 661
           + WR EGI YR+NE+F
Sbjct: 156 ISWRSEGIHYRKNEVF 171


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 29/76 (38%), Positives = 51/76 (67%)
 Frame = +1

Query: 274 RSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKN 453
           R P+ +I  +++ + K  ++++ A+TK N N  +V EFL  +I  +  YFGK++E  +K+
Sbjct: 43  RHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKD 102

Query: 454 NFVLIYELLDEILDFG 501
           N   I+ELLDE++D+G
Sbjct: 103 NVSFIFELLDEMIDYG 118



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +2

Query: 146 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
           MI GLF++N KG+ LI + +R D+ ++  + FRV +
Sbjct: 1   MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAI 36



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 620 WRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQ 787
           WRR GIKYR+N ++     + +  ++   S  ++        V    ++ G+PECQ
Sbjct: 168 WRRAGIKYRKNSIY---IDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQ 220


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 15/59 (25%), Positives = 35/59 (59%)
 Frame = +1

Query: 328 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 504
           ++ L   T  +     + + + +I+DV++++FG  +   ++ N  +I +LL E++D+GY
Sbjct: 66  DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGY 124


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 32.7 bits (71), Expect = 0.067
 Identities = 16/86 (18%), Positives = 37/86 (43%)
 Frame = +1

Query: 235 RIQSECDHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQ 414
           RI        Q+ ++       +   + + A ++         N   + E +   ++++ 
Sbjct: 34  RIHQLISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILD 93

Query: 415 SYFGKISEENIKNNFVLIYELLDEIL 492
           S+FG + E ++  NF  +  +LDEI+
Sbjct: 94  SFFGNVCELDLIFNFYKVSAILDEII 119


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 490 RSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIPWPRSHFAL 350
           RS  AT +S++S S   +  S   T  S+   ++ TQ+ WP +H  L
Sbjct: 727 RSQNATSQSQESGS--EIGSSIAGTAGSYNVGTSNTQLSWPSTHSTL 771


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 757 DLHDPLFPAHVXQRALGPCGDIXKLTNXSTSREQLVSSVLN 635
           D+ D L  +HV Q  L P GD  +  N   S+   ++ VLN
Sbjct: 430 DVKDTLNTSHVVQVRLPPYGDNARFCNIEISKTTRLAMVLN 470


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/46 (26%), Positives = 29/46 (63%)
 Frame = +1

Query: 313 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 450
           +I+  N  + +  +++ + A++ E   +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = -1

Query: 583 LVPPWRQT*CPAEVMNVFRTPVSEFEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASH 404
           L+ PW    C   + N   TP+   +  +     Q T  + QS++  SL +S  N +A+ 
Sbjct: 483 LINPWDYNECAEIISNALSTPLERRKMIERESYKQVTTHTMQSWT-SSLIRSLANKLAA- 540

Query: 403 Q*SSTGTQIP 374
             + T  +IP
Sbjct: 541 --TKTDQRIP 548


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 351 CDCCQPNICTLDMEERCACNVGNR 280
           C C    +C L +E  C C++ N+
Sbjct: 675 CSCKSITVCPLHIEYLCKCDLSNK 698


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 775 QPRDNYDLHDPLFPAHVXQRALGPC 701
           QP D  DL   L P H+   A+G C
Sbjct: 51  QPEDTQDLQRKLKPRHMQMIAIGGC 75


>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +1

Query: 406 VMQSYFGKISEENIKNNFVLIYELLDEILDFG 501
           V++++ G+I+++  ++  V+IY + D  L FG
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFG 144


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 227 AVDAFRVNVTMLASRCDHL-LPTLHAHLSSISSVQIFGWQ 343
           A+  F     M+A   D L + T+H HL  ++S +++ WQ
Sbjct: 413 AISGFGGASLMIALISDFLSVMTIHIHLLYLASSRLYNWQ 452


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -1

Query: 316 YGRKMCVQCW*QVIAPAGEHGHIHSECVHSITTNIISVDSRDQHLAFMVVNEQASDHCRR 137
           YG+K  +Q     + PA +      E  +S+ T   ++D+ D    FMV NE   D CRR
Sbjct: 165 YGKKSNLQF---SVYPAPQVSTSVVEPYNSVLTTHATLDNSD--CTFMVDNEACYDICRR 219


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 269 RCDHLLPTLHAHLSSISSVQIFGWQQSQSKM*TR 370
           RC  +  +L  H+S + SV +  W   Q++  TR
Sbjct: 51  RCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTR 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,501,637
Number of Sequences: 5004
Number of extensions: 71129
Number of successful extensions: 194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)