Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0041
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    29   0.52 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   2.1  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   2.1  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   2.8  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   3.7  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   3.7  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    25   4.9  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   4.9  
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    25   6.5  

>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 264 SHLAPARYSMNYRHGRRKNSMCTAGKK*NTTMY 166
           SH AP     N+ HGRR+N++     K    +Y
Sbjct: 23  SHFAPNPRGQNHTHGRRRNTLALCTTKDQMFVY 55


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 119 FLSYWKQSFE*L*YSKYIVVFYF--FPAVHILFFLLPC 226
           FLS+   SF  L +   I + YF  FP +H LFF   C
Sbjct: 126 FLSF-SFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLC 162


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 7   CRNAAAATYCRLIEATTKILETNLRVRSHRPTLRGKQIFIILETE 141
           C +A     C+L E T+  L+    + SH P       F  LE E
Sbjct: 412 CNHAYNTMLCKLTEDTSSFLKRQTEMLSHSPASSHWASFSSLENE 456


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 364 FILNFITFCLFHFYTKHNITNYPSTTMAEN 453
           FI   I F L  FYT   +TN+ +T++ EN
Sbjct: 366 FIWFHIVFVLAAFYTASLLTNWNTTSVYEN 395


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 180 NTTMYLLYYNHSKLCFQYDKNLLSS 106
           N T++  +YNHS +   YD+N+  S
Sbjct: 826 NDTIWYDWYNHSVINHDYDENITMS 850


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 156 SIVSTLLCSTFFPRCTYYFFFYHADSSWSTEPGPGAN 266
           S+ STL+ S+F P      +F+    S ST P    N
Sbjct: 157 SVRSTLIISSFLPLFLLIMYFFVLPESESTSPSINNN 193


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = -1

Query: 180 NTTMYLLYYNHSKLCFQYDKNL 115
           N+T++  +YNH+++  QY++N+
Sbjct: 801 NSTVWYDWYNHTEIVRQYNENV 822


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +3

Query: 186 FFPRCTYYFFFYHADSSW----STEPGPG 260
           F  +CTYY   +H  S W    +T  GPG
Sbjct: 81  FLCQCTYYLACFHFLSEWLLFRTTNLGPG 109


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 231 SSWSTEPGPGANPDGGIKKLF 293
           SSW+ EP P +     IK+ F
Sbjct: 210 SSWADEPSPSSTETSSIKRAF 230


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 117 DFYHIGNRVLSDCSIVSTLLCS 182
           DF H+G+R+ S  + VSTL+ S
Sbjct: 75  DFVHLGSRMKSGNTKVSTLISS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,797
Number of Sequences: 5004
Number of extensions: 34503
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)