Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0015
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.76 
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    29   0.76 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   4.0  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   4.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.0  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   9.3  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 386 SGCGRCRVWSMFVRYVRFSE 445
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 23/90 (25%), Positives = 41/90 (45%)
 Frame = -2

Query: 647 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRHFRECHIKYIQFLR 468
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F       + F +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394

Query: 467 PHYIKILTR*NEHNARTSTRPGTGRIRFPS 378
              I I+ R   H+   + R G     FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 581 TRLTARKIRGRPENAGPDPVRNVRHFRECHIKY 483
           T L++  + G  ENA  DP+ +V   RE  + Y
Sbjct: 199 TNLSSENLNGIIENAFEDPLNHVLDIREYDVPY 231


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 248 GTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 129
           GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 374 GTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 165 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 28
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 423 TNIDQTRHRPHPLPVQTRHAPV 358
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,959
Number of Sequences: 5004
Number of extensions: 69129
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)