Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0011
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    27   3.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   3.6  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    27   3.6  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.4  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  

>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 378 SSEGVLVDDQTVQDLGRQTNIPHCNFQMHCC 286
           + EG LV D+   ++G+    P C F   CC
Sbjct: 64  TEEGFLVYDEEELNIGQGGGTPDCPFDCQCC 94


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +2

Query: 503 IFMRCGLTKDSLKNIPREILHK----IEPEYCGVCALELDSFGMSRLHYLSKK 649
           +F  CG+ +D  + I  E++HK    ++  +  VC L+L  F   + +Y+ ++
Sbjct: 66  LFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDL-IFNFEKAYYVMEE 117


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 657 SHDFFER*CKRDIPKESNSRAQTPQYSGS 571
           +H FFE+   RDIP++  S +Q P  S S
Sbjct: 110 NHSFFEKDNARDIPQQP-SHSQNPSSSSS 137


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +1

Query: 151 SNTGFSIMSIPFYKMNSREEYEMNEDCGWTEEPPSFREER*GITNTAMHLEITMGDIGLT 330
           S++  S   IPF   N       N +    + PP + E     T    HL I MG + + 
Sbjct: 202 SDSNLSFQKIPFTSPNQSHTSLANYNPDLLDGPPDYHES----TKVDTHLPIKMGPLDVQ 257

Query: 331 T 333
           T
Sbjct: 258 T 258


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 166 SIMSIPFYKMNSREEYEMNED 228
           SI S P  K  SRE++E NED
Sbjct: 366 SIRSSPKSKKRSREDFEENED 386


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 144 MNCFNLYNVITDFFQY*MSTLQFRSLNKN 58
           +NC++L NV+ ++       L F+ +N+N
Sbjct: 415 LNCYSLLNVLANYVVVFKDRLIFQEINQN 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,975
Number of Sequences: 5004
Number of extensions: 65025
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)