Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0006
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    31   0.15 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   3.3  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   7.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   7.7  

>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -1

Query: 75  ILKVRYF*THKFNTNVLIKCIFF 7
           + KVR   T KF++NV+ KCIFF
Sbjct: 562 LYKVRALSTQKFSSNVMEKCIFF 584


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 339 VVIRYLIKRILSRLEGPSRIERRLLHLM 256
           V+++YL KRI  +LE    + +R  HLM
Sbjct: 12  VIVKYLGKRIRVQLEFKKELAQRSKHLM 39


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 408 RKTNTVNPICLDNVA*HAQISVSVVIRYLIKRILSRLEGPSRIE 277
           ++ + +NP  + N+     I++S+V +YL+         PSR++
Sbjct: 279 KRLHIINPTEIKNLLDSKSINLSLVSKYLLVSAFLASYNPSRLD 322


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 512 FRGQFSLHLAIFFSKFDTSD*CYFKMVLL 426
           F GQ S HL+ +  KF+ S   + K+V++
Sbjct: 313 FLGQISSHLSSYKEKFEESSKNFEKLVIM 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,030
Number of Sequences: 5004
Number of extensions: 39232
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)