Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0002
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    53   1e-08
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    26   2.6  

>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 53.2 bits (122), Expect = 1e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
           KI ++ L+E+ F    +QR L+F+ IAR  RIP +EVELLIM+AL+  LI  +
Sbjct: 276 KIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGV 328


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
           K+ +L +  +A    +    LS+ ++A+  +I  +EVEL I+  +   L+E
Sbjct: 282 KMKLLTIASLA--TQAPNNTLSYGDVAKSLKIDENEVELWIIDVIRAGLVE 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,212,322
Number of Sequences: 5004
Number of extensions: 17211
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)