Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0127
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    28   1.2  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    27   2.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.1  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    27   2.1  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   3.7  

>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 372 LASALEAFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTERITIATTSHQ 226
           LA   +A R+NP+ G+ H R   R+    VR     +T R  IA  + Q
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQ 104


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 372 LASALEAFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTER 253
           LA   +A R+NP+ G+ H R   R+ +  VR     +T R
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTAR 95


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 150 LANFVRNDRKSRH-RRIKKQRRYERLAAT 67
           LANF+R DR+S H    +K++ Y ++A++
Sbjct: 696 LANFIRYDRESVHIPEFQKRKSYSQVASS 724


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 372 LASALEAFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTER 253
           LA   +A R+NP+ G+ H R   R+ +  VR     +T R
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTAR 95


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 67  CGSQAFIATLLFDPSMSALPIIANKIRQAL 156
           CGS   I  +LF  S S L   + KI Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,478
Number of Sequences: 5004
Number of extensions: 47780
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)