Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0117
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.68 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.68 
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    29   0.90 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   2.7  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.6  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.4  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   8.4  

>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
 Frame = -2

Query: 555 PENAGPDPVRNVRRFSECHIKYIQFLXPHYIKI--------LTR*NEHNARTS-TRPGTG 403
           P +  PDPV  +   S  H+       PH+  +         T  + HNA +S T P +G
Sbjct: 158 PISTLPDPVATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPPQSG 217

Query: 402 RIRFPSKPDTPRSSEPILIPKLR 334
              + S P  P   +P  IP  R
Sbjct: 218 ---YSSMPSLPYLQQPFQIPSQR 237


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 393 SGCGRCRVWSMFVRYVRFSE 452
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 23/90 (25%), Positives = 41/90 (45%)
 Frame = -2

Query: 654 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFSECHIKYIQFLX 475
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+      + F  
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394

Query: 474 PHYIKILTR*NEHNARTSTRPGTGRIRFPS 385
              I I+ R   H+   + R G     FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 576 ARKIRGRPENAGPDPVRNVRRFSE 505
           AR I GRPEN G   ++N+ R S+
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSK 237


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 255 GTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 136
           GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 374 GTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 172 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 35
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 430 TNIDQTRHRPHPLPVQTRHAPV 365
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = -1

Query: 271 DLLRIWYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGF 125
           D+ R  Y     LH  P P F     SI +   + CS  S    P   F
Sbjct: 83  DVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVASLTCSVNSMSVSPQSNF 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,115
Number of Sequences: 5004
Number of extensions: 64551
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)