Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20030
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    31   0.23 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    28   1.6  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    27   3.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.7  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    26   4.8  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    26   4.8  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   6.4  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 371 RSNESDLSPNPRPIYAARPLSSCIFTTKYRELSVTASSALLDIYLLGTSQIIR 213
           R NE     N +   A+  L+ C  TTK        ++ L DIY++G  +I++
Sbjct: 548 RENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQ 600


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 195 NFMTNSFPFDTNLMRPVHCGSCKFQSAA 112
           N  +  FP+D  +  P  C +CKF+  A
Sbjct: 142 NEASRRFPYDYKIFFPNKCSTCKFEKPA 169


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = +1

Query: 679 QQVLQNHSNNPSQSNK 726
           QQ++Q++SNNP QS++
Sbjct: 264 QQIVQSNSNNPDQSSR 279


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 252 PGYLSIGH--FANNSPLVLSSNFMTNSFPFDTNLMRPVH 142
           P +L   H  F   +PL   SNF++N F  DT  ++  H
Sbjct: 170 PEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSH 208


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 9   HYFL*TMDTYESVILVKNEYSFLKYHPEHLTEDTGQQI 122
           HY+    +TYE +  + N +++L   P   T D   +I
Sbjct: 162 HYYAALRETYEEIGFLPNFFTYLTTFPPLFTRDEKTEI 199


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 208 KWRIICEVPNR*ISRSALEAVTDSSRYFVVK 300
           K + IC  P+R ++R  ++ VT+  +Y  VK
Sbjct: 184 KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 307 DDNGRAAYIG-LGFGDRSDSFDLNVALQDHFKW 402
           + +GR  Y G LG+ D + S + NV ++  FK+
Sbjct: 637 EQHGRGIYSGTLGYWDVTGSAEFNVIIRSAFKY 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,559
Number of Sequences: 5004
Number of extensions: 51232
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)