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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20022
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    33   0.028
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.4  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   3.2  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   4.3  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   4.3  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   4.3  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   7.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   7.5  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   9.9  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   9.9  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   9.9  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   9.9  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 53  MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 208
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 178 FQALTDSTVVVAGEDAVVQFLLEVLV 101
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 101 NQDLEEKLYNSILTGDYDSAVRQSLE 178
           + DLE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 164 RQSLEYESQGKGSIIQNVVNNLIIDKRRNTRST 262
           ++S++ ES  K S  +NV+    +D +RN   T
Sbjct: 62  KESIKDESSAKSSETENVLEFATLDSKRNVNDT 94


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 176
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 401 PIPRMRELPTAMV*TSILNSSVGSSLPCGRTTECTSD 511
           P  R+ + P  +  TS  NSS  +  PCG     T D
Sbjct: 39  PSIRLSDGPNGIRGTSFFNSSPSACFPCGTALGATFD 75


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +2

Query: 74  VVELSADTSN-QDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRN 250
           ++E++A +   Q+    L   +    + +AVR      S     +   V N+ +I+   N
Sbjct: 23  IIEVNASSKTCQETLSSLLRELQLSHFSTAVRPG----SDTSIFVFVKVQNDYLIELAHN 78

Query: 251 TRSTATSCGSATDRKLLESTSH*TLDSS 334
            R+++  CG+  D   +   S   +DSS
Sbjct: 79  DRTSSFLCGALDDLNHVNVNSVTDIDSS 106


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 27  NFSLYLRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRA 173
           N S  + C  SP A A  + P+TL         T ASS  T+  + V A
Sbjct: 242 NDSFMVGCIYSP-AEAKEHVPKTLRNSNKDLEMTDASSSETSMSIPVHA 289


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -3

Query: 661 DVVXRTWRAGRT-IAPWCCQRC 599
           DV  R  RA R  I  WCCQ C
Sbjct: 143 DVSVRFSRAAREQIEGWCCQNC 164


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -1

Query: 408  GIGCGTELQSEVVVSVNDLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLLVFRLLSMI 229
            G  CG   +   VV +  LD V G DE+    + LS +     DP   A L++ +L+S +
Sbjct: 1113 GHSCGVIKEYSTVVVMGSLDGVEGSDETVSGGQRLSLDRPPTNDP---ASLMIHQLISCM 1169

Query: 228  RLL 220
              +
Sbjct: 1170 NAI 1172


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 513 HNTKYNQYLKMSTTTCNCNS 572
           +++ YN+   M T++C+C+S
Sbjct: 47  YSSTYNEITNMDTSSCSCSS 66


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 468 EVHY-LVGEQQSVLQIHNTKYNQYLKMSTTTCNC 566
           E+H  L+G +   +Q     YN Y++ STT  +C
Sbjct: 588 EIHKKLIGFRGEQIQRVTKLYNSYIEFSTTPFDC 621


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 429 RRWCRQAY*TRQLEVHYLVGEQQSVLQIHNTK 524
           RR+    Y T Q E +Y+     ++LQIH T+
Sbjct: 594 RRYPVDIYYTPQPEANYIQAAITTILQIHTTQ 625


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 309 VLSNNFLSVADPQLVAVLLVFRLLSMIRLL 220
           VLS+ FL+   P L AVL   R +S   LL
Sbjct: 282 VLSSVFLAWHSPPLQAVLFCIRRISFFNLL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,371
Number of Sequences: 5004
Number of extensions: 51700
Number of successful extensions: 171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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